Yerba mate chlorosis-associated virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Betarhabdovirinae; Cytorhabdovirus; Yerba mate chlorosis-associated cytorhabdovirus

Average proteome isoelectric point is 7.22

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1W5S0M4|A0A1W5S0M4_9RHAB Large structural protein OS=Yerba mate chlorosis-associated virus OX=2487100 PE=4 SV=1
MM1 pKa = 7.67SNGFEE6 pKa = 4.14FKK8 pKa = 10.61KK9 pKa = 10.54IEE11 pKa = 4.17GKK13 pKa = 10.36LDD15 pKa = 3.52YY16 pKa = 11.19SGVQHH21 pKa = 6.39MSSALDD27 pKa = 4.06DD28 pKa = 5.12DD29 pKa = 5.74NMFADD34 pKa = 4.35KK35 pKa = 10.85NVSLEE40 pKa = 4.07NKK42 pKa = 10.29EE43 pKa = 4.42EE44 pKa = 4.21GTKK47 pKa = 8.94TAEE50 pKa = 3.82IVVTQNIPAASKK62 pKa = 10.26EE63 pKa = 4.26KK64 pKa = 10.73NSPFLKK70 pKa = 10.51ALSKK74 pKa = 9.97KK75 pKa = 9.17TEE77 pKa = 4.47DD78 pKa = 3.42NTGKK82 pKa = 10.28SGEE85 pKa = 4.21VEE87 pKa = 3.94EE88 pKa = 5.1SKK90 pKa = 9.87TPKK93 pKa = 9.89DD94 pKa = 3.01TDD96 pKa = 3.4KK97 pKa = 11.61AKK99 pKa = 8.69EE100 pKa = 4.25TKK102 pKa = 9.81SVKK105 pKa = 9.95SLKK108 pKa = 10.4EE109 pKa = 3.75NLKK112 pKa = 10.73SRR114 pKa = 11.84LEE116 pKa = 4.0DD117 pKa = 3.23HH118 pKa = 7.35LGRR121 pKa = 11.84SSNNSKK127 pKa = 10.9EE128 pKa = 4.04EE129 pKa = 4.02NKK131 pKa = 10.42DD132 pKa = 3.26SKK134 pKa = 11.32AVEE137 pKa = 4.08KK138 pKa = 10.12TKK140 pKa = 11.19KK141 pKa = 10.29NLSKK145 pKa = 10.88DD146 pKa = 3.43LNKK149 pKa = 9.96VLEE152 pKa = 4.35EE153 pKa = 4.29DD154 pKa = 4.2EE155 pKa = 4.87EE156 pKa = 5.36IEE158 pKa = 5.03DD159 pKa = 3.67EE160 pKa = 4.46SEE162 pKa = 4.0EE163 pKa = 4.1LFSPEE168 pKa = 4.77EE169 pKa = 3.81IRR171 pKa = 11.84DD172 pKa = 4.06CLDD175 pKa = 3.51LFCNKK180 pKa = 10.11LGVDD184 pKa = 5.23GEE186 pKa = 4.82SAWYY190 pKa = 9.02NHH192 pKa = 5.99FVASLNINGAVFSSEE207 pKa = 3.66IEE209 pKa = 4.15SWVSAIKK216 pKa = 10.42HH217 pKa = 4.7EE218 pKa = 4.37RR219 pKa = 11.84ATASHH224 pKa = 6.63RR225 pKa = 11.84AIKK228 pKa = 10.3EE229 pKa = 3.42ILTNLNTQVVRR240 pKa = 11.84LTAQVKK246 pKa = 10.11ALSDD250 pKa = 3.93TNGSLAKK257 pKa = 10.44QNEE260 pKa = 4.55SLLNMVDD267 pKa = 3.84SMRR270 pKa = 11.84KK271 pKa = 8.04NQEE274 pKa = 3.13EE275 pKa = 4.29WLNTQLEE282 pKa = 4.39LRR284 pKa = 11.84QGAIRR289 pKa = 11.84GGYY292 pKa = 8.3QKK294 pKa = 10.93EE295 pKa = 4.14KK296 pKa = 10.99GKK298 pKa = 8.89LTEE301 pKa = 4.17EE302 pKa = 4.24MSDD305 pKa = 3.56EE306 pKa = 4.23NASSGSYY313 pKa = 10.72YY314 pKa = 10.62LDD316 pKa = 3.4EE317 pKa = 4.99TDD319 pKa = 5.95DD320 pKa = 3.82EE321 pKa = 4.61TSEE324 pKa = 4.51LLVSHH329 pKa = 7.39FLTLLKK335 pKa = 10.47INSTQIQDD343 pKa = 3.3PRR345 pKa = 11.84VRR347 pKa = 11.84MAVRR351 pKa = 11.84SLFPMKK357 pKa = 10.19ILVAACEE364 pKa = 4.0HH365 pKa = 7.29GIRR368 pKa = 11.84EE369 pKa = 3.98ADD371 pKa = 3.41KK372 pKa = 10.94PKK374 pKa = 10.73ALEE377 pKa = 4.32KK378 pKa = 10.49LKK380 pKa = 10.81EE381 pKa = 4.14WILNNN386 pKa = 3.72

Molecular weight: 43.4 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1W5RYH2|A0A1W5RYH2_9RHAB Phosphoprotein OS=Yerba mate chlorosis-associated virus OX=2487100 PE=4 SV=1
MM1 pKa = 7.24FFIIKK6 pKa = 9.58PLIKK10 pKa = 10.52LLVYY14 pKa = 8.9LLCLFFLLSVLVWGCIMMCDD34 pKa = 5.12LYY36 pKa = 11.18EE37 pKa = 4.06CHH39 pKa = 7.0NNLKK43 pKa = 10.84LNIISMKK50 pKa = 10.6KK51 pKa = 10.57FIDD54 pKa = 3.73CVKK57 pKa = 10.45KK58 pKa = 10.32KK59 pKa = 10.07RR60 pKa = 11.84QNPFCPLL67 pKa = 3.2

Molecular weight: 8.0 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

4015

67

2134

573.6

65.69

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.359 ± 0.752

1.893 ± 0.451

5.355 ± 0.496

6.426 ± 0.972

4.633 ± 0.452

5.056 ± 0.256

2.391 ± 0.297

7.547 ± 0.72

8.02 ± 0.818

10.66 ± 0.439

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.64 ± 0.291

5.305 ± 0.448

4.209 ± 0.472

3.362 ± 0.426

3.985 ± 0.596

8.344 ± 0.741

5.28 ± 0.766

5.006 ± 0.234

1.694 ± 0.211

3.836 ± 0.569
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski