Lactococcus phage CHPC964

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; Lactococcus virus CHPC964

Average proteome isoelectric point is 6.61

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 56 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A650EW59|A0A650EW59_9CAUD Uncharacterized protein OS=Lactococcus phage CHPC964 OX=2675256 GN=CHPC964_000966 PE=4 SV=1
MM1 pKa = 7.62IDD3 pKa = 3.38VVGWFAIGVVVGMAVSCVFCMFLVWLFTKK32 pKa = 10.57DD33 pKa = 3.23SEE35 pKa = 4.51

Molecular weight: 3.9 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A650F879|A0A650F879_9CAUD Tail length tape-measure protein OS=Lactococcus phage CHPC964 OX=2675256 GN=CHPC964_000997 PE=4 SV=1
MM1 pKa = 7.46CKK3 pKa = 9.75KK4 pKa = 10.38RR5 pKa = 11.84KK6 pKa = 5.78YY7 pKa = 8.56TKK9 pKa = 9.78MGALYY14 pKa = 10.54SIANAQHH21 pKa = 5.94NKK23 pKa = 9.45KK24 pKa = 10.07KK25 pKa = 10.41ADD27 pKa = 4.21KK28 pKa = 10.12IPVRR32 pKa = 11.84AYY34 pKa = 8.85YY35 pKa = 10.06CKK37 pKa = 9.74WCNSYY42 pKa = 10.56HH43 pKa = 7.02LSSQQRR49 pKa = 11.84LNIKK53 pKa = 9.21TGVIGG58 pKa = 3.97

Molecular weight: 6.74 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

56

0

56

8866

35

725

158.3

17.94

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.271 ± 0.482

0.722 ± 0.188

5.335 ± 0.279

7.275 ± 0.645

4.388 ± 0.391

6.125 ± 0.614

1.218 ± 0.154

7.207 ± 0.301

8.877 ± 0.579

8.651 ± 0.422

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.402 ± 0.173

6.982 ± 0.376

2.301 ± 0.245

3.643 ± 0.26

3.35 ± 0.236

6.553 ± 0.432

6.542 ± 0.373

6.643 ± 0.396

1.511 ± 0.185

4.004 ± 0.367
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski