Phocoena phocoena papillomavirus 2

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Upsilonpapillomavirus; Upsilonpapillomavirus 3

Average proteome isoelectric point is 5.8

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|F2VIR3|F2VIR3_9PAPI Replication protein E1 OS=Phocoena phocoena papillomavirus 2 OX=706526 GN=E1 PE=3 SV=1
MM1 pKa = 7.78ADD3 pKa = 3.67DD4 pKa = 4.43PRR6 pKa = 11.84TIKK9 pKa = 10.46DD10 pKa = 3.16LCKK13 pKa = 10.86NFDD16 pKa = 3.97LSVQALLILCVFCKK30 pKa = 10.45KK31 pKa = 10.25QLTDD35 pKa = 3.52LEE37 pKa = 4.39IWSFSHH43 pKa = 5.92KK44 pKa = 7.93QLRR47 pKa = 11.84VVWKK51 pKa = 10.33KK52 pKa = 10.13GFPFAACKK60 pKa = 10.25KK61 pKa = 8.81CLEE64 pKa = 4.07VCALVDD70 pKa = 3.24CWRR73 pKa = 11.84NFQRR77 pKa = 11.84SATAKK82 pKa = 10.0QVEE85 pKa = 4.6EE86 pKa = 4.32DD87 pKa = 3.27TGKK90 pKa = 10.85ALGDD94 pKa = 3.51LDD96 pKa = 4.35VRR98 pKa = 11.84CMGCYY103 pKa = 10.7KK104 pKa = 11.03LMTTLEE110 pKa = 4.07KK111 pKa = 10.35AYY113 pKa = 10.31QLEE116 pKa = 4.59DD117 pKa = 3.12EE118 pKa = 4.67KK119 pKa = 11.16QFCKK123 pKa = 10.23IAGYY127 pKa = 9.07WKK129 pKa = 10.21GYY131 pKa = 9.78CINCLTDD138 pKa = 3.71PPPLVSWFNYY148 pKa = 8.78AVTVGGPPPLITWGFDD164 pKa = 3.23PPRR167 pKa = 11.84RR168 pKa = 11.84PAQSVSSGSSWTITTSTSSSGRR190 pKa = 11.84EE191 pKa = 3.98PEE193 pKa = 4.51PDD195 pKa = 3.68DD196 pKa = 5.56PEE198 pKa = 7.13DD199 pKa = 4.68GDD201 pKa = 4.56SSDD204 pKa = 4.42DD205 pKa = 3.73QEE207 pKa = 4.41EE208 pKa = 4.06MLII211 pKa = 4.27

Molecular weight: 23.74 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|F2VIR7|F2VIR7_9PAPI Major capsid protein L1 OS=Phocoena phocoena papillomavirus 2 OX=706526 GN=L1 PE=3 SV=1
MM1 pKa = 7.62PLILVVAFTYY11 pKa = 10.26IHH13 pKa = 6.79IFAGRR18 pKa = 11.84NANACIFNIFQMLHH32 pKa = 6.55LPPPAPLSRR41 pKa = 11.84VLHH44 pKa = 5.73TDD46 pKa = 3.04EE47 pKa = 4.63FVSRR51 pKa = 11.84TSTFYY56 pKa = 10.02HH57 pKa = 6.15CQSEE61 pKa = 4.12RR62 pKa = 11.84LITIGHH68 pKa = 7.38PFYY71 pKa = 10.82KK72 pKa = 10.53VQDD75 pKa = 3.9GGNVVAEE82 pKa = 4.13KK83 pKa = 10.73VSPNQYY89 pKa = 9.42RR90 pKa = 11.84VFRR93 pKa = 11.84VTLPDD98 pKa = 4.27PNVLALTDD106 pKa = 3.48SSLYY110 pKa = 10.46NPEE113 pKa = 3.88KK114 pKa = 10.63EE115 pKa = 3.85RR116 pKa = 11.84LVWILRR122 pKa = 11.84GIDD125 pKa = 3.39VGRR128 pKa = 11.84GGPLGIGVTGHH139 pKa = 7.4PYY141 pKa = 10.66LDD143 pKa = 3.52KK144 pKa = 11.41LKK146 pKa = 10.88DD147 pKa = 3.51AEE149 pKa = 4.51NPNGSYY155 pKa = 11.2NKK157 pKa = 10.32GSDD160 pKa = 3.42DD161 pKa = 3.7ARR163 pKa = 11.84QNVCMDD169 pKa = 4.32PKK171 pKa = 10.31SVQMLILGCAPAIGQHH187 pKa = 4.91WDD189 pKa = 3.15KK190 pKa = 11.92AEE192 pKa = 4.06ACASDD197 pKa = 4.05RR198 pKa = 11.84DD199 pKa = 4.17AVDD202 pKa = 3.32ACPPLEE208 pKa = 4.59LKK210 pKa = 9.19NTTIEE215 pKa = 4.51DD216 pKa = 3.36GDD218 pKa = 3.81MFDD221 pKa = 5.32IGFGCMNNSTLQATFSAVPLDD242 pKa = 3.49ITNTTTKK249 pKa = 10.54HH250 pKa = 5.62PDD252 pKa = 3.03ILKK255 pKa = 7.88MTGDD259 pKa = 3.85IYY261 pKa = 11.54GNTCWFCVSRR271 pKa = 11.84EE272 pKa = 3.96QMFARR277 pKa = 11.84HH278 pKa = 5.04LWSRR282 pKa = 11.84NGDD285 pKa = 3.55NGDD288 pKa = 4.16PVPHH292 pKa = 6.87TDD294 pKa = 2.97GHH296 pKa = 6.76KK297 pKa = 10.09DD298 pKa = 3.0TSLYY302 pKa = 10.94LSGTGDD308 pKa = 3.97TKK310 pKa = 11.15TMATPVYY317 pKa = 9.7FNTPSGSLLTSEE329 pKa = 4.25TQLFNRR335 pKa = 11.84PFWMQRR341 pKa = 11.84AQGLNNGVCWNNTLFVTVADD361 pKa = 3.92NTRR364 pKa = 11.84GTNLNISVAKK374 pKa = 10.43QEE376 pKa = 4.21GKK378 pKa = 9.97NAEE381 pKa = 4.41SYY383 pKa = 8.1TASNYY388 pKa = 8.41KK389 pKa = 10.07HH390 pKa = 6.24YY391 pKa = 10.73NRR393 pKa = 11.84HH394 pKa = 5.18CEE396 pKa = 3.68IYY398 pKa = 9.47EE399 pKa = 4.11LEE401 pKa = 5.3FILQLATVALTPEE414 pKa = 4.56ALSHH418 pKa = 5.61LHH420 pKa = 7.03AMDD423 pKa = 3.72STILTKK429 pKa = 10.34WNLGFTASNATAVEE443 pKa = 3.98STYY446 pKa = 10.75RR447 pKa = 11.84YY448 pKa = 9.73INSKK452 pKa = 8.25ATKK455 pKa = 9.69CPIDD459 pKa = 3.64IPEE462 pKa = 4.84PEE464 pKa = 4.99PKK466 pKa = 10.1DD467 pKa = 3.44KK468 pKa = 11.46YY469 pKa = 11.25ADD471 pKa = 3.49LTFWNVDD478 pKa = 3.21VSKK481 pKa = 11.0SLSKK485 pKa = 10.78DD486 pKa = 3.23LSAFPLGRR494 pKa = 11.84KK495 pKa = 8.68FLYY498 pKa = 10.02QAGLQNGATRR508 pKa = 11.84SATKK512 pKa = 10.4RR513 pKa = 11.84SATKK517 pKa = 10.06TSTKK521 pKa = 10.31VPTKK525 pKa = 10.1RR526 pKa = 11.84KK527 pKa = 9.53RR528 pKa = 11.84RR529 pKa = 3.71

Molecular weight: 58.77 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

2515

171

638

419.2

46.47

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.203 ± 0.354

2.783 ± 0.845

6.481 ± 0.559

5.129 ± 0.42

3.658 ± 0.374

7.197 ± 0.373

2.584 ± 0.511

4.493 ± 0.557

5.288 ± 0.889

8.986 ± 0.611

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.988 ± 0.303

3.817 ± 0.638

6.64 ± 0.71

4.334 ± 0.88

5.01 ± 0.391

7.674 ± 0.704

7.634 ± 0.908

5.686 ± 0.053

1.551 ± 0.375

2.863 ± 0.215
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski