Xylella phage Salvo

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Sanovirus; Xylella virus Salvo

Average proteome isoelectric point is 6.36

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 72 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|V5Q9T1|V5Q9T1_9CAUD Uncharacterized protein OS=Xylella phage Salvo OX=1415147 GN=Salvo_10 PE=4 SV=1
MM1 pKa = 7.79CEE3 pKa = 4.21LDD5 pKa = 3.34VTAIVASIAPRR16 pKa = 11.84DD17 pKa = 3.74YY18 pKa = 10.55SASVAEE24 pKa = 4.76LGNDD28 pKa = 3.14AGRR31 pKa = 11.84ITWEE35 pKa = 4.19AACEE39 pKa = 3.8DD40 pKa = 3.35ARR42 pKa = 11.84EE43 pKa = 4.0LFGEE47 pKa = 4.28HH48 pKa = 6.62FDD50 pKa = 3.49RR51 pKa = 11.84AAFDD55 pKa = 3.96EE56 pKa = 4.6YY57 pKa = 10.88FSHH60 pKa = 7.22FGAWDD65 pKa = 3.62AEE67 pKa = 3.94EE68 pKa = 4.7LAAHH72 pKa = 6.24TDD74 pKa = 3.79EE75 pKa = 4.59EE76 pKa = 4.93CAALMLQFIAGDD88 pKa = 3.4MRR90 pKa = 11.84EE91 pKa = 4.34ADD93 pKa = 3.72FSSYY97 pKa = 11.61ADD99 pKa = 3.27IEE101 pKa = 4.6GGAEE105 pKa = 3.97PFTDD109 pKa = 3.74EE110 pKa = 3.83WWPQYY115 pKa = 8.13EE116 pKa = 4.35TASEE120 pKa = 4.19AGTVAGRR127 pKa = 11.84FFRR130 pKa = 11.84ADD132 pKa = 3.54DD133 pKa = 3.7GRR135 pKa = 11.84VFYY138 pKa = 10.84YY139 pKa = 10.11IGEE142 pKa = 4.14

Molecular weight: 15.8 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|V5Q9T6|V5Q9T6_9CAUD Uncharacterized protein OS=Xylella phage Salvo OX=1415147 GN=Salvo_15 PE=4 SV=1
MM1 pKa = 7.65KK2 pKa = 9.41GTAQRR7 pKa = 11.84AARR10 pKa = 11.84AALTRR15 pKa = 11.84PRR17 pKa = 11.84RR18 pKa = 11.84RR19 pKa = 11.84HH20 pKa = 5.04AGARR24 pKa = 11.84QPRR27 pKa = 11.84AARR30 pKa = 11.84VEE32 pKa = 3.87NRR34 pKa = 11.84AA35 pKa = 3.35

Molecular weight: 3.91 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

72

0

72

17776

35

1445

246.9

27.48

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.739 ± 0.69

0.866 ± 0.116

6.683 ± 0.311

6.666 ± 0.264

3.69 ± 0.171

7.516 ± 0.317

1.873 ± 0.217

4.484 ± 0.17

4.967 ± 0.358

8.101 ± 0.261

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.622 ± 0.153

3.837 ± 0.232

4.489 ± 0.27

3.707 ± 0.302

7.139 ± 0.282

5.575 ± 0.201

5.513 ± 0.279

6.616 ± 0.264

1.8 ± 0.175

3.117 ± 0.185
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski