Phytophthora kernoviae

Taxonomy: cellular organisms; Eukaryota; Sar; Stramenopiles; Oomycota; Peronosporales; Peronosporaceae; Phytophthora

Average proteome isoelectric point is 6.14

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 9833 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A421ETC8|A0A421ETC8_9STRA CULLIN_2 domain-containing protein OS=Phytophthora kernoviae OX=325452 GN=BBI17_004979 PE=3 SV=1
MM1 pKa = 7.18HH2 pKa = 6.79TTFSLALVAAAVVLVDD18 pKa = 4.85AKK20 pKa = 8.71PTYY23 pKa = 9.44VARR26 pKa = 11.84IPNGANVPDD35 pKa = 4.21VAALGHH41 pKa = 6.17VDD43 pKa = 3.63PAGGGANNDD52 pKa = 3.26FGLDD56 pKa = 3.61FEE58 pKa = 5.08SAGEE62 pKa = 4.01SWTTEE67 pKa = 4.0FCQKK71 pKa = 10.97DD72 pKa = 3.47SDD74 pKa = 5.26GDD76 pKa = 3.91GQTNGQEE83 pKa = 4.74LGDD86 pKa = 4.45PCCQWVQDD94 pKa = 4.14SNAVLEE100 pKa = 4.4WTTGVSHH107 pKa = 7.42PGDD110 pKa = 3.31ASKK113 pKa = 9.84TSDD116 pKa = 3.15EE117 pKa = 4.57SLWASITCGSSNSTTASSTAGSSSSTGTTDD147 pKa = 3.43AGTPTTTDD155 pKa = 2.6TDD157 pKa = 3.67ATTSSSGGATASSSSAASAVTPGVYY182 pKa = 9.99SAVGVVAVVATFFLL196 pKa = 4.51

Molecular weight: 19.4 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3R7JS05|A0A3R7JS05_9STRA Uncharacterized protein OS=Phytophthora kernoviae OX=325452 GN=BBI17_004821 PE=4 SV=1
MM1 pKa = 7.62ALFRR5 pKa = 11.84SLTRR9 pKa = 11.84QFKK12 pKa = 9.74ALSVAAPRR20 pKa = 11.84VAAQAPRR27 pKa = 11.84FAAVASVPSTTPASLVTTLALRR49 pKa = 11.84SAINFPQLQTRR60 pKa = 11.84SMGYY64 pKa = 9.78KK65 pKa = 10.2LKK67 pKa = 10.17TKK69 pKa = 10.65ASVKK73 pKa = 10.09KK74 pKa = 10.36RR75 pKa = 11.84FRR77 pKa = 11.84VNCNGVVKK85 pKa = 10.65RR86 pKa = 11.84SQANKK91 pKa = 9.53RR92 pKa = 11.84HH93 pKa = 5.93IATKK97 pKa = 8.75KK98 pKa = 7.02TRR100 pKa = 11.84EE101 pKa = 3.84RR102 pKa = 11.84IRR104 pKa = 11.84RR105 pKa = 11.84LGKK108 pKa = 9.37PVFVQGKK115 pKa = 7.01IRR117 pKa = 11.84KK118 pKa = 9.17NILRR122 pKa = 11.84MLAKK126 pKa = 10.4

Molecular weight: 14.07 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

9833

0

9833

4605710

49

5336

468.4

52.04

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.715 ± 0.026

1.527 ± 0.011

5.806 ± 0.016

6.868 ± 0.03

3.969 ± 0.016

6.331 ± 0.024

2.29 ± 0.012

4.44 ± 0.016

5.379 ± 0.026

9.455 ± 0.027

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.654 ± 0.01

3.729 ± 0.012

4.382 ± 0.016

4.17 ± 0.017

5.594 ± 0.019

7.612 ± 0.026

5.838 ± 0.02

7.301 ± 0.019

1.161 ± 0.008

2.779 ± 0.014
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski