Bat polyomavirus 6d

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Sepolyvirales; Polyomaviridae; unclassified Polyomaviridae

Average proteome isoelectric point is 5.5

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0D5ZYQ7|A0A0D5ZYQ7_9POLY Small t antigen OS=Bat polyomavirus 6d OX=1623686 PE=4 SV=1
MM1 pKa = 7.31GALLAVLAEE10 pKa = 4.54VIDD13 pKa = 4.36LSAVTGISVEE23 pKa = 4.37GILAGEE29 pKa = 4.48AFATAEE35 pKa = 3.94VLAAQIEE42 pKa = 4.75NITLLEE48 pKa = 4.19GLTAAEE54 pKa = 4.39AVAEE58 pKa = 4.11LGYY61 pKa = 9.24TVDD64 pKa = 3.54VFNALASVTEE74 pKa = 4.05NFPEE78 pKa = 4.45VFTLLAAGEE87 pKa = 4.27VAANSSLVLSAAVAAATYY105 pKa = 8.63PYY107 pKa = 10.09SYY109 pKa = 9.28THH111 pKa = 6.44EE112 pKa = 4.19VPIANLNNMALQVWQPEE129 pKa = 3.73IDD131 pKa = 3.34ILFPGISSLARR142 pKa = 11.84FLNYY146 pKa = 9.33IDD148 pKa = 3.62PTNWAGDD155 pKa = 3.49LFRR158 pKa = 11.84AVGRR162 pKa = 11.84YY163 pKa = 7.21FWEE166 pKa = 4.06TAQRR170 pKa = 11.84SGRR173 pKa = 11.84NLLEE177 pKa = 3.66QEE179 pKa = 3.65IRR181 pKa = 11.84AVGQRR186 pKa = 11.84AAGGFSEE193 pKa = 4.2TLARR197 pKa = 11.84YY198 pKa = 9.21FEE200 pKa = 4.05NARR203 pKa = 11.84WAIRR207 pKa = 11.84HH208 pKa = 5.4YY209 pKa = 10.56PADD212 pKa = 3.66LYY214 pKa = 11.58GRR216 pKa = 11.84LQQYY220 pKa = 7.71YY221 pKa = 10.04TDD223 pKa = 5.11LPPLNPAQLRR233 pKa = 11.84EE234 pKa = 3.78LSRR237 pKa = 11.84RR238 pKa = 11.84VGGPDD243 pKa = 3.42QPYY246 pKa = 10.53KK247 pKa = 10.94LYY249 pKa = 10.67DD250 pKa = 3.51SHH252 pKa = 7.94VKK254 pKa = 10.17SAEE257 pKa = 4.05FVTKK261 pKa = 10.51SPPPGGAHH269 pKa = 6.18QRR271 pKa = 11.84TTPDD275 pKa = 2.65WLLPLILGLYY285 pKa = 10.37GDD287 pKa = 5.25ISPSWADD294 pKa = 3.23TLEE297 pKa = 4.06EE298 pKa = 4.48LEE300 pKa = 4.54EE301 pKa = 4.54EE302 pKa = 4.01EE303 pKa = 5.96DD304 pKa = 4.02GPKK307 pKa = 9.87KK308 pKa = 10.26KK309 pKa = 10.08KK310 pKa = 9.9RR311 pKa = 11.84ASQRR315 pKa = 11.84SSRR318 pKa = 11.84SAKK321 pKa = 9.27TNNN324 pKa = 3.08

Molecular weight: 35.42 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0D5ZYQ7|A0A0D5ZYQ7_9POLY Small t antigen OS=Bat polyomavirus 6d OX=1623686 PE=4 SV=1
MM1 pKa = 7.77DD2 pKa = 5.3HH3 pKa = 7.29LLTRR7 pKa = 11.84EE8 pKa = 3.66EE9 pKa = 4.76SIRR12 pKa = 11.84LMQLLEE18 pKa = 4.24LPMDD22 pKa = 3.65EE23 pKa = 4.77FGNFNAMRR31 pKa = 11.84SQFHH35 pKa = 5.6KK36 pKa = 10.25QIKK39 pKa = 9.53KK40 pKa = 6.86MHH42 pKa = 6.94PDD44 pKa = 2.82KK45 pKa = 11.35GGNPEE50 pKa = 3.83QAKK53 pKa = 10.2EE54 pKa = 4.03LISLYY59 pKa = 10.69KK60 pKa = 10.38KK61 pKa = 10.66LEE63 pKa = 4.13EE64 pKa = 5.23KK65 pKa = 10.38ISPLQPDD72 pKa = 3.25SDD74 pKa = 3.82ATTTEE79 pKa = 3.71QVYY82 pKa = 9.71EE83 pKa = 3.87QGQFFLYY90 pKa = 10.6LKK92 pKa = 10.57DD93 pKa = 3.18WVSCNRR99 pKa = 11.84GEE101 pKa = 4.54SSCACLFCMLKK112 pKa = 10.7ANHH115 pKa = 6.24EE116 pKa = 4.02KK117 pKa = 10.46RR118 pKa = 11.84KK119 pKa = 10.0RR120 pKa = 11.84EE121 pKa = 3.83RR122 pKa = 11.84KK123 pKa = 8.42HH124 pKa = 6.19NVWGHH129 pKa = 5.65CFCFQCYY136 pKa = 7.7ITWFGLEE143 pKa = 4.33HH144 pKa = 7.39SWMDD148 pKa = 3.13WLSWRR153 pKa = 11.84NVIANTPYY161 pKa = 10.73GCLNII166 pKa = 4.6

Molecular weight: 19.74 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

1518

166

661

379.5

42.97

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.588 ± 1.983

2.306 ± 0.886

5.468 ± 0.609

7.642 ± 0.388

4.875 ± 0.644

5.863 ± 0.977

1.845 ± 0.463

4.677 ± 0.175

6.522 ± 1.349

10.738 ± 0.498

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.174 ± 0.535

4.875 ± 0.33

5.138 ± 0.83

4.414 ± 0.456

4.611 ± 0.299

5.863 ± 0.225

6.258 ± 0.623

5.402 ± 0.707

1.383 ± 0.486

3.36 ± 0.317
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski