Paenibacillus beijingensis

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus

Average proteome isoelectric point is 6.47

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4723 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0D5NEH5|A0A0D5NEH5_9BACL Formamidopyrimidine-DNA glycosylase OS=Paenibacillus beijingensis OX=1126833 GN=mutM PE=3 SV=1
MM1 pKa = 7.64AKK3 pKa = 10.37YY4 pKa = 10.41SWVDD8 pKa = 2.75KK9 pKa = 9.16DD10 pKa = 3.48TCIACGACGATAPDD24 pKa = 3.47IYY26 pKa = 11.02DD27 pKa = 3.64YY28 pKa = 11.51DD29 pKa = 4.43DD30 pKa = 3.97EE31 pKa = 5.76GLAEE35 pKa = 4.4VIYY38 pKa = 11.01DD39 pKa = 3.28GDD41 pKa = 3.95GNHH44 pKa = 6.17GVKK47 pKa = 10.54AIAEE51 pKa = 4.12DD52 pKa = 5.08LYY54 pKa = 11.61DD55 pKa = 5.12DD56 pKa = 5.55LQDD59 pKa = 4.35ACDD62 pKa = 3.92GCPTDD67 pKa = 4.24SIKK70 pKa = 10.77IADD73 pKa = 3.88EE74 pKa = 4.08PFNRR78 pKa = 4.46

Molecular weight: 8.41 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0D5NI31|A0A0D5NI31_9BACL MarR family transcriptional regulator OS=Paenibacillus beijingensis OX=1126833 GN=VN24_09420 PE=4 SV=1
MM1 pKa = 7.9RR2 pKa = 11.84PTFKK6 pKa = 10.82PNVSKK11 pKa = 10.8RR12 pKa = 11.84KK13 pKa = 8.95KK14 pKa = 8.25VHH16 pKa = 5.49GFRR19 pKa = 11.84KK20 pKa = 9.99RR21 pKa = 11.84MSSKK25 pKa = 10.47NGRR28 pKa = 11.84KK29 pKa = 9.01VLAARR34 pKa = 11.84RR35 pKa = 11.84QKK37 pKa = 10.23GRR39 pKa = 11.84KK40 pKa = 8.56VLSAA44 pKa = 4.05

Molecular weight: 5.12 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4723

0

4723

1475279

26

3119

312.4

34.62

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.999 ± 0.048

0.8 ± 0.01

5.038 ± 0.028

6.642 ± 0.043

4.144 ± 0.029

7.859 ± 0.031

2.039 ± 0.018

6.489 ± 0.037

5.121 ± 0.034

10.216 ± 0.043

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.805 ± 0.02

3.504 ± 0.026

4.195 ± 0.023

3.611 ± 0.022

5.514 ± 0.04

6.2 ± 0.03

5.169 ± 0.025

7.175 ± 0.029

1.237 ± 0.014

3.243 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski