Akodon montensis polyomavirus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Sepolyvirales; Polyomaviridae; unclassified Polyomaviridae

Average proteome isoelectric point is 7.11

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A343W7C6|A0A343W7C6_9POLY VP1 protein OS=Akodon montensis polyomavirus OX=2163422 PE=3 SV=1
MM1 pKa = 7.73ACQTQGRR8 pKa = 11.84KK9 pKa = 9.32RR10 pKa = 11.84LGPGKK15 pKa = 9.96APKK18 pKa = 10.01VAEE21 pKa = 3.87QRR23 pKa = 11.84LPRR26 pKa = 11.84ILRR29 pKa = 11.84KK30 pKa = 10.37GGVEE34 pKa = 3.96VLGTVPLSEE43 pKa = 3.94HH44 pKa = 4.0TQYY47 pKa = 10.96RR48 pKa = 11.84VEE50 pKa = 4.82CIVKK54 pKa = 9.43PVFGNEE60 pKa = 3.67PSNPPNYY67 pKa = 8.66WNHH70 pKa = 5.59SSALSGSALTDD81 pKa = 3.85GEE83 pKa = 4.57LHH85 pKa = 6.32LCYY88 pKa = 10.78SLMEE92 pKa = 4.13VQLPEE97 pKa = 3.9ISEE100 pKa = 4.18QCFEE104 pKa = 4.38DD105 pKa = 5.48AMIVWEE111 pKa = 4.43CFRR114 pKa = 11.84MEE116 pKa = 4.35TEE118 pKa = 4.63LLMTPKK124 pKa = 9.22ITVGGVNSSGGINSVQGTQMYY145 pKa = 8.32FWAVGGSPLDD155 pKa = 3.56VMYY158 pKa = 10.89LLPKK162 pKa = 10.36EE163 pKa = 4.11NMRR166 pKa = 11.84PRR168 pKa = 11.84GNLTAFDD175 pKa = 4.45SGHH178 pKa = 5.59SVYY181 pKa = 10.71DD182 pKa = 3.01IGVQKK187 pKa = 10.76GQVVNEE193 pKa = 4.26TFPVEE198 pKa = 4.05YY199 pKa = 9.75WVADD203 pKa = 3.64PSKK206 pKa = 11.08NDD208 pKa = 2.79NCRR211 pKa = 11.84YY212 pKa = 8.68FGRR215 pKa = 11.84VVGGAATPPVITYY228 pKa = 9.9SNSSTIPLLDD238 pKa = 3.81EE239 pKa = 4.58NGLGIMCNNGRR250 pKa = 11.84CYY252 pKa = 8.99ITCADD257 pKa = 3.16ITGYY261 pKa = 9.99LANRR265 pKa = 11.84VEE267 pKa = 4.41SSHH270 pKa = 6.24GRR272 pKa = 11.84FFRR275 pKa = 11.84LHH277 pKa = 5.05FRR279 pKa = 11.84QRR281 pKa = 11.84RR282 pKa = 11.84IKK284 pKa = 10.75NPYY287 pKa = 8.41TMNLLYY293 pKa = 10.69KK294 pKa = 10.33QVFQSNATAVEE305 pKa = 3.98AQKK308 pKa = 10.97EE309 pKa = 4.54VVEE312 pKa = 4.42VTTVEE317 pKa = 4.35DD318 pKa = 3.96EE319 pKa = 4.43SGLPMQVSNPRR330 pKa = 11.84CGQYY334 pKa = 9.99TPIQQQQASPLYY346 pKa = 9.66NVQGG350 pKa = 3.52

Molecular weight: 38.86 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A343W7C6|A0A343W7C6_9POLY VP1 protein OS=Akodon montensis polyomavirus OX=2163422 PE=3 SV=1
MM1 pKa = 7.72ALQVLPEE8 pKa = 4.1VPLGGGIPGVPDD20 pKa = 3.45WLFDD24 pKa = 4.46IIPAGLSTLQEE35 pKa = 4.11VFHH38 pKa = 7.15RR39 pKa = 11.84IATGIITSYY48 pKa = 9.54YY49 pKa = 7.22HH50 pKa = 5.81TGRR53 pKa = 11.84AIVRR57 pKa = 11.84RR58 pKa = 11.84AISVEE63 pKa = 3.94MQRR66 pKa = 11.84LLSDD70 pKa = 3.46LRR72 pKa = 11.84DD73 pKa = 3.65GFEE76 pKa = 4.21TTFEE80 pKa = 4.22ALGQGDD86 pKa = 4.33PVEE89 pKa = 5.13AIIDD93 pKa = 3.78QVRR96 pKa = 11.84AAHH99 pKa = 5.61STMIARR105 pKa = 11.84EE106 pKa = 3.76RR107 pKa = 11.84RR108 pKa = 11.84LIEE111 pKa = 3.83QGTPLLPNLGGQIVDD126 pKa = 4.15TVAGAAQTVSNIVVDD141 pKa = 3.79VTNIPMDD148 pKa = 4.66GYY150 pKa = 11.33NALQDD155 pKa = 3.65GVHH158 pKa = 7.27RR159 pKa = 11.84LGQWVQMAGSDD170 pKa = 3.46GGTPHH175 pKa = 6.71YY176 pKa = 10.62SYY178 pKa = 10.53PPWVLYY184 pKa = 9.94VLQEE188 pKa = 4.3LEE190 pKa = 4.4TPGPNISAASRR201 pKa = 11.84QPRR204 pKa = 11.84TLKK207 pKa = 10.6RR208 pKa = 11.84KK209 pKa = 9.52SQDD212 pKa = 2.88GLSNPRR218 pKa = 11.84QKK220 pKa = 10.63KK221 pKa = 9.25ARR223 pKa = 11.84TRR225 pKa = 11.84KK226 pKa = 7.93STQSGRR232 pKa = 11.84TKK234 pKa = 7.15TTKK237 pKa = 10.3NIKK240 pKa = 9.14KK241 pKa = 9.66GRR243 pKa = 11.84RR244 pKa = 11.84GGLRR248 pKa = 11.84HH249 pKa = 6.24SATKK253 pKa = 10.47

Molecular weight: 27.62 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

1852

186

681

370.4

41.43

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.263 ± 1.71

2.7 ± 1.05

4.644 ± 0.824

6.371 ± 0.592

2.808 ± 0.587

8.207 ± 1.829

2.484 ± 0.283

5.022 ± 0.528

6.21 ± 1.679

9.017 ± 0.558

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.808 ± 0.397

4.752 ± 0.682

5.724 ± 0.303

5.022 ± 0.523

5.508 ± 0.616

5.616 ± 0.405

5.13 ± 0.888

6.695 ± 0.702

1.404 ± 0.264

3.618 ± 0.574
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski