Litorimicrobium taeanense

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Litorimicrobium

Average proteome isoelectric point is 6.24

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3839 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1H9FAY9|A0A1H9FAY9_9RHOB Uncharacterized protein OS=Litorimicrobium taeanense OX=657014 GN=SAMN04488092_10617 PE=4 SV=1
MM1 pKa = 7.53AVKK4 pKa = 10.29QIVTGTTADD13 pKa = 3.47EE14 pKa = 4.27TLEE17 pKa = 4.11LTSGWGRR24 pKa = 11.84ISAGGGDD31 pKa = 3.81DD32 pKa = 3.57TLYY35 pKa = 10.35ATAQNGGNGTQGHH48 pKa = 5.55EE49 pKa = 3.84VHH51 pKa = 6.83TYY53 pKa = 10.07GGSGDD58 pKa = 4.02DD59 pKa = 3.47VTYY62 pKa = 11.4LDD64 pKa = 4.66FNSITSFSAGHH75 pKa = 6.51HH76 pKa = 5.78ARR78 pKa = 11.84GGTNDD83 pKa = 3.1GMSFSEE89 pKa = 4.28QNSMPSTDD97 pKa = 3.78HH98 pKa = 6.94IIPVSAHH105 pKa = 5.78SGSNVVSEE113 pKa = 4.51GVDD116 pKa = 3.04TFVFTNLQDD125 pKa = 3.34VGGLVVGRR133 pKa = 11.84LEE135 pKa = 4.37DD136 pKa = 4.1LEE138 pKa = 4.42HH139 pKa = 7.11SRR141 pKa = 11.84DD142 pKa = 3.56SIYY145 pKa = 10.74INSIGSNNEE154 pKa = 3.26INLSNNSGTVNGNSWRR170 pKa = 11.84IVEE173 pKa = 4.2WNGNHH178 pKa = 6.78IDD180 pKa = 4.13GNADD184 pKa = 3.27PQQWLMIQTTGGGTLLYY201 pKa = 9.7ALEE204 pKa = 4.42GARR207 pKa = 11.84VDD209 pKa = 5.36DD210 pKa = 4.84SPLTPGGEE218 pKa = 4.27QEE220 pKa = 4.3SHH222 pKa = 5.19FVSMNSATSFVNSNPVSVSFIDD244 pKa = 3.73QIDD247 pKa = 4.34IIPVGFSPDD256 pKa = 3.28AGGLLLDD263 pKa = 5.68DD264 pKa = 5.06YY265 pKa = 11.01DD266 pKa = 4.38TEE268 pKa = 4.33QSDD271 pKa = 3.79VDD273 pKa = 3.92SSINGTQEE281 pKa = 3.48GDD283 pKa = 3.65VIAAGLNDD291 pKa = 4.91DD292 pKa = 4.55SVTANGGDD300 pKa = 3.5DD301 pKa = 4.29TIWGGSGNDD310 pKa = 3.72VIDD313 pKa = 4.52GGSGDD318 pKa = 4.5DD319 pKa = 4.13SLDD322 pKa = 3.76GGSGADD328 pKa = 3.91TIIGGAGNDD337 pKa = 3.86VISGGSASSDD347 pKa = 3.27PRR349 pKa = 11.84DD350 pKa = 3.59VIYY353 pKa = 10.66GGNGNDD359 pKa = 4.42YY360 pKa = 11.0IDD362 pKa = 3.93GGYY365 pKa = 11.05GNDD368 pKa = 3.9EE369 pKa = 4.29LRR371 pKa = 11.84GDD373 pKa = 4.73DD374 pKa = 4.49GNDD377 pKa = 3.47TITGGFGADD386 pKa = 3.47SVIGGAGDD394 pKa = 4.66DD395 pKa = 4.0EE396 pKa = 6.06LNGQSLSDD404 pKa = 4.18EE405 pKa = 4.27IFGGDD410 pKa = 3.75GEE412 pKa = 5.05DD413 pKa = 4.58FINGGFGHH421 pKa = 7.23DD422 pKa = 3.98RR423 pKa = 11.84LNGGADD429 pKa = 3.35ADD431 pKa = 4.3RR432 pKa = 11.84FFHH435 pKa = 7.21LGIADD440 pKa = 4.56HH441 pKa = 6.66GSDD444 pKa = 3.81WIQDD448 pKa = 3.35YY449 pKa = 11.0SAAQGDD455 pKa = 3.98VLQYY459 pKa = 11.29GGTASANQFQVNFAATSGSGEE480 pKa = 4.11EE481 pKa = 4.63GVQEE485 pKa = 4.4AFVIYY490 pKa = 10.41QPTGQILWVLIDD502 pKa = 3.41GHH504 pKa = 7.02AQDD507 pKa = 5.46EE508 pKa = 4.72INLLLGGTQHH518 pKa = 7.58DD519 pKa = 4.49LLAA522 pKa = 5.63

Molecular weight: 53.79 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1H9IVY2|A0A1H9IVY2_9RHOB Uncharacterized protein OS=Litorimicrobium taeanense OX=657014 GN=SAMN04488092_11348 PE=4 SV=1
MM1 pKa = 7.06TCAKK5 pKa = 9.92VRR7 pKa = 11.84LKK9 pKa = 11.08APLRR13 pKa = 11.84RR14 pKa = 11.84GLTRR18 pKa = 11.84SHH20 pKa = 5.76AHH22 pKa = 6.57KK23 pKa = 10.57SHH25 pKa = 6.07NQDD28 pKa = 2.39HH29 pKa = 5.57VVVVQFWYY37 pKa = 10.17AYY39 pKa = 10.11LPEE42 pKa = 5.24GSSKK46 pKa = 10.46MSWQKK51 pKa = 10.31ISRR54 pKa = 11.84PTVPNQRR61 pKa = 11.84GRR63 pKa = 11.84EE64 pKa = 3.72RR65 pKa = 11.84RR66 pKa = 11.84DD67 pKa = 3.43CIKK70 pKa = 10.38IGSLAAFQNSRR81 pKa = 11.84TISYY85 pKa = 8.53GVPLDD90 pKa = 3.44KK91 pKa = 10.7RR92 pKa = 11.84KK93 pKa = 9.63QRR95 pKa = 11.84AVSSLCLGAAPVDD108 pKa = 3.39QLNCHH113 pKa = 5.93RR114 pKa = 11.84HH115 pKa = 4.44LHH117 pKa = 5.61SRR119 pKa = 11.84PLPRR123 pKa = 11.84RR124 pKa = 11.84NRR126 pKa = 11.84MEE128 pKa = 4.59RR129 pKa = 11.84GPDD132 pKa = 3.19QKK134 pKa = 10.7STLNRR139 pKa = 11.84IRR141 pKa = 11.84LNLKK145 pKa = 8.7SVRR148 pKa = 11.84TCATLASGRR157 pKa = 11.84PIPNLLSPLITLFCADD173 pKa = 4.47HH174 pKa = 6.74SDD176 pKa = 3.94CEE178 pKa = 4.3KK179 pKa = 11.01ASTRR183 pKa = 11.84TEE185 pKa = 3.87RR186 pKa = 11.84LLPDD190 pKa = 3.68PTAPHH195 pKa = 7.49PSRR198 pKa = 11.84FHH200 pKa = 6.7PKK202 pKa = 9.76RR203 pKa = 11.84EE204 pKa = 4.0QVSDD208 pKa = 4.0DD209 pKa = 3.54SATARR214 pKa = 11.84DD215 pKa = 3.95WIRR218 pKa = 11.84LFGQGYY224 pKa = 5.09WHH226 pKa = 7.09ISAYY230 pKa = 10.58ALTRR234 pKa = 11.84LLAAPEE240 pKa = 4.13AAKK243 pKa = 10.53SASPPIRR250 pKa = 11.84DD251 pKa = 4.06TILCATT257 pKa = 4.63

Molecular weight: 28.98 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3839

0

3839

1201575

40

2970

313.0

34.01

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.066 ± 0.051

0.884 ± 0.011

6.044 ± 0.047

5.722 ± 0.04

3.702 ± 0.024

8.598 ± 0.051

2.11 ± 0.022

5.194 ± 0.031

3.348 ± 0.033

10.131 ± 0.047

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.823 ± 0.021

2.659 ± 0.025

5.016 ± 0.033

3.396 ± 0.027

6.583 ± 0.049

5.227 ± 0.03

5.635 ± 0.032

7.259 ± 0.035

1.354 ± 0.014

2.25 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski