Arthromitus sp. (strain SFB-mouse-Japan)

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Clostridia; Eubacteriales; Clostridiaceae; Candidatus Arthromitus; unclassified Candidatus Arthromitus; Candidatus Arthromitus sp. SFB-mouse

Average proteome isoelectric point is 6.55

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1487 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|F9VJJ1|F9VJJ1_ARTSS Uncharacterized protein OS=Arthromitus sp. (strain SFB-mouse-Japan) OX=1029718 GN=SFBM_0521 PE=4 SV=1
MM1 pKa = 7.61FDD3 pKa = 5.6SIDD6 pKa = 3.83DD7 pKa = 3.92LLNYY11 pKa = 9.36IRR13 pKa = 11.84SNDD16 pKa = 3.18TDD18 pKa = 4.22LSVTYY23 pKa = 10.08DD24 pKa = 3.16ISSGNLLVMNNVTNQILFNQSLNYY48 pKa = 10.16EE49 pKa = 3.71IGEE52 pKa = 4.29FKK54 pKa = 10.67TSIEE58 pKa = 3.98PLFTHH63 pKa = 6.75LNCDD67 pKa = 3.02VVYY70 pKa = 11.23VKK72 pKa = 10.14DD73 pKa = 3.56TLTT76 pKa = 3.41

Molecular weight: 8.7 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|F9VM00|F9VM00_ARTSS Elongation factor G OS=Arthromitus sp. (strain SFB-mouse-Japan) OX=1029718 GN=fus PE=3 SV=1
MM1 pKa = 7.34ARR3 pKa = 11.84ISGVDD8 pKa = 3.07IPKK11 pKa = 10.34DD12 pKa = 3.27KK13 pKa = 10.68RR14 pKa = 11.84VEE16 pKa = 3.89VSLTYY21 pKa = 9.98IYY23 pKa = 10.75GIGLSTSKK31 pKa = 10.73RR32 pKa = 11.84ILKK35 pKa = 8.4EE36 pKa = 3.45TDD38 pKa = 2.67INPNIRR44 pKa = 11.84VKK46 pKa = 10.82DD47 pKa = 3.61LTEE50 pKa = 3.89EE51 pKa = 3.99QVNLIRR57 pKa = 11.84DD58 pKa = 4.99FINKK62 pKa = 8.46NLRR65 pKa = 11.84VEE67 pKa = 4.16GDD69 pKa = 3.32LRR71 pKa = 11.84RR72 pKa = 11.84DD73 pKa = 2.85IVLNIKK79 pKa = 10.16RR80 pKa = 11.84LIEE83 pKa = 3.9IGCYY87 pKa = 9.39RR88 pKa = 11.84GIRR91 pKa = 11.84HH92 pKa = 6.76RR93 pKa = 11.84KK94 pKa = 8.24RR95 pKa = 11.84LPLRR99 pKa = 11.84GQRR102 pKa = 11.84TKK104 pKa = 10.95TNARR108 pKa = 11.84TIKK111 pKa = 10.5GPRR114 pKa = 11.84KK115 pKa = 8.34TIANKK120 pKa = 10.18KK121 pKa = 8.82KK122 pKa = 10.46

Molecular weight: 14.19 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1487

0

1487

473593

36

2749

318.5

36.34

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.859 ± 0.059

1.221 ± 0.024

6.307 ± 0.053

6.653 ± 0.068

5.203 ± 0.056

5.747 ± 0.058

1.291 ± 0.023

11.112 ± 0.093

8.771 ± 0.068

9.097 ± 0.065

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.285 ± 0.026

7.715 ± 0.065

2.371 ± 0.037

2.099 ± 0.031

3.527 ± 0.038

7.287 ± 0.06

4.467 ± 0.068

6.006 ± 0.048

0.493 ± 0.017

4.489 ± 0.048
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski