Devosia sp. LC5

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Devosiaceae; Devosia; unclassified Devosia

Average proteome isoelectric point is 6.31

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4116 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A085F4N9|A0A085F4N9_9RHIZ ABC transporter membrane spanning protein (Sugar) OS=Devosia sp. LC5 OX=1502724 GN=FF80_02697 PE=3 SV=1
MM1 pKa = 7.89RR2 pKa = 11.84IIALTTIFAALSIAPVLADD21 pKa = 4.79DD22 pKa = 5.4VPANLNGHH30 pKa = 5.66WAIDD34 pKa = 4.15GACDD38 pKa = 3.36NADD41 pKa = 3.35DD42 pKa = 4.38SVHH45 pKa = 7.55IEE47 pKa = 3.99GNMLALGTGEE57 pKa = 3.84PLAVVFYY64 pKa = 10.32PDD66 pKa = 5.21DD67 pKa = 4.2SPSGNGAIHH76 pKa = 6.4WEE78 pKa = 4.29EE79 pKa = 4.28EE80 pKa = 4.27GSVDD84 pKa = 3.49NFEE87 pKa = 4.6YY88 pKa = 11.23VPDD91 pKa = 4.04SDD93 pKa = 3.81EE94 pKa = 5.79LIYY97 pKa = 11.17NPEE100 pKa = 4.23GYY102 pKa = 11.33GMGDD106 pKa = 4.02AKK108 pKa = 10.72PSLYY112 pKa = 10.19KK113 pKa = 10.18RR114 pKa = 11.84CKK116 pKa = 9.59SS117 pKa = 3.25

Molecular weight: 12.51 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A085FCD0|A0A085FCD0_9RHIZ Gfa-like protein OS=Devosia sp. LC5 OX=1502724 GN=FF80_01393 PE=3 SV=1
MM1 pKa = 7.26SQPKK5 pKa = 9.63KK6 pKa = 9.95PPRR9 pKa = 11.84VTHH12 pKa = 6.65ALAARR17 pKa = 11.84HH18 pKa = 5.04EE19 pKa = 4.27ALWLRR24 pKa = 11.84LTALHH29 pKa = 6.11AQIAAVAARR38 pKa = 11.84RR39 pKa = 11.84AQAPVSGQTISVAEE53 pKa = 3.97ALLRR57 pKa = 11.84DD58 pKa = 3.72AQVFLGLGDD67 pKa = 4.48VLPMAAPDD75 pKa = 3.57HH76 pKa = 6.59GGLLTQLGQALAGLDD91 pKa = 2.89AWEE94 pKa = 4.49AVNAEE99 pKa = 3.63WRR101 pKa = 11.84GEE103 pKa = 3.85LNAFVWKK110 pKa = 10.71VVGDD114 pKa = 3.68PVLPVQRR121 pKa = 11.84LRR123 pKa = 11.84PKK125 pKa = 10.22LVAAAAPHH133 pKa = 7.04ADD135 pKa = 3.63PAYY138 pKa = 9.61AAYY141 pKa = 8.8KK142 pKa = 10.74ARR144 pKa = 11.84MADD147 pKa = 3.36LRR149 pKa = 11.84QNLPSASSNSTIARR163 pKa = 11.84PNRR166 pKa = 11.84HH167 pKa = 6.35SGFEE171 pKa = 4.2LPPSRR176 pKa = 11.84AGRR179 pKa = 11.84RR180 pKa = 11.84LGAPSRR186 pKa = 11.84AARR189 pKa = 11.84EE190 pKa = 3.97PLCWQATRR198 pKa = 11.84SGYY201 pKa = 10.47FDD203 pKa = 5.74DD204 pKa = 4.68PACRR208 pKa = 11.84FHH210 pKa = 7.37PPPAA214 pKa = 5.32

Molecular weight: 22.97 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4116

0

4116

1240715

30

1832

301.4

32.61

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.516 ± 0.046

0.669 ± 0.012

5.651 ± 0.032

5.454 ± 0.032

3.855 ± 0.025

8.591 ± 0.037

1.979 ± 0.02

5.66 ± 0.026

3.134 ± 0.03

10.289 ± 0.04

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.555 ± 0.016

2.813 ± 0.022

5.126 ± 0.03

3.299 ± 0.023

6.372 ± 0.04

5.441 ± 0.026

5.517 ± 0.026

7.462 ± 0.036

1.327 ± 0.015

2.29 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski