Muricauda pacifica

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Muricauda

Average proteome isoelectric point is 6.41

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4085 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2T0M905|A0A2T0M905_9FLAO CubicO group peptidase (Beta-lactamase class C family) OS=Muricauda pacifica OX=1080225 GN=CLV81_2352 PE=4 SV=1
MM1 pKa = 7.44EE2 pKa = 4.84MSAQNSGDD10 pKa = 3.74CRR12 pKa = 11.84TAIPVCADD20 pKa = 3.43MPILSATDD28 pKa = 3.77GSGDD32 pKa = 3.86IDD34 pKa = 5.58DD35 pKa = 5.54FDD37 pKa = 6.76PDD39 pKa = 4.14VITQTGCLEE48 pKa = 4.3KK49 pKa = 11.05GSVASANIEE58 pKa = 4.33NNTSWYY64 pKa = 9.72VFRR67 pKa = 11.84AGTDD71 pKa = 3.48GQIGFDD77 pKa = 3.57IEE79 pKa = 4.38ALPVTPGGIVTSEE92 pKa = 3.8IDD94 pKa = 3.28FALYY98 pKa = 10.7GPFDD102 pKa = 3.51QTLGSNFCTTIGNGSDD118 pKa = 2.81IPIRR122 pKa = 11.84CNYY125 pKa = 8.87EE126 pKa = 3.57INDD129 pKa = 3.83TGFTGIGVNPISGQVGAPFVRR150 pKa = 11.84ASQNTYY156 pKa = 10.99DD157 pKa = 3.49EE158 pKa = 4.42WLDD161 pKa = 3.62VQQGEE166 pKa = 4.4IYY168 pKa = 10.92YY169 pKa = 10.54LFINNFNTNFNGDD182 pKa = 4.1PEE184 pKa = 4.56PFSLTFTGSSVDD196 pKa = 3.44ADD198 pKa = 3.46QNTALDD204 pKa = 3.73CTLRR208 pKa = 11.84DD209 pKa = 3.55EE210 pKa = 5.33FLGLDD215 pKa = 4.04IIACEE220 pKa = 4.1GDD222 pKa = 3.41PDD224 pKa = 4.1IVLSALNSPAGPNIANITWEE244 pKa = 4.17VDD246 pKa = 3.43LEE248 pKa = 4.43DD249 pKa = 5.42DD250 pKa = 4.2GVYY253 pKa = 10.77DD254 pKa = 4.03QVLATGAGATEE265 pKa = 4.29LTVTSPNSGRR275 pKa = 11.84YY276 pKa = 8.68RR277 pKa = 11.84VTIEE281 pKa = 3.88TTFATIITDD290 pKa = 4.41DD291 pKa = 3.32ILITFFGVPVLDD303 pKa = 3.92EE304 pKa = 4.23VRR306 pKa = 11.84VLDD309 pKa = 4.85DD310 pKa = 5.17LVNSDD315 pKa = 3.35QTDD318 pKa = 3.73PYY320 pKa = 10.47NIEE323 pKa = 3.73ISVLGNGNYY332 pKa = 9.99EE333 pKa = 3.88YY334 pKa = 10.41AINGGEE340 pKa = 4.09FQDD343 pKa = 4.94DD344 pKa = 4.14PVFLDD349 pKa = 3.73VPPGVNTVVINDD361 pKa = 3.43VNGCGTTEE369 pKa = 4.51PIEE372 pKa = 4.07FLVVGYY378 pKa = 9.34PKK380 pKa = 10.71FFTPNGDD387 pKa = 3.92GIHH390 pKa = 7.23DD391 pKa = 3.74NWNVLGVEE399 pKa = 4.3TLTNPSIFIFDD410 pKa = 3.74RR411 pKa = 11.84YY412 pKa = 11.07GKK414 pKa = 9.85FLKK417 pKa = 10.63QLDD420 pKa = 4.08INSLGWDD427 pKa = 3.44GTFNGRR433 pKa = 11.84PLPSSDD439 pKa = 2.51YY440 pKa = 10.38WFRR443 pKa = 11.84LDD445 pKa = 4.67YY446 pKa = 11.16EE447 pKa = 4.66RR448 pKa = 11.84DD449 pKa = 3.65DD450 pKa = 4.16EE451 pKa = 4.65GVLVARR457 pKa = 11.84SVRR460 pKa = 11.84RR461 pKa = 11.84HH462 pKa = 5.32FSLIRR467 pKa = 4.08

Molecular weight: 50.84 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2T0MJ46|A0A2T0MJ46_9FLAO Uncharacterized protein OS=Muricauda pacifica OX=1080225 GN=CLV81_1581 PE=4 SV=1
MM1 pKa = 7.07TLQRR5 pKa = 11.84FRR7 pKa = 11.84ITFSGEE13 pKa = 3.68ANKK16 pKa = 9.72PLPIQIKK23 pKa = 8.91PNVVKK28 pKa = 10.74ILGRR32 pKa = 11.84LGLYY36 pKa = 9.91KK37 pKa = 10.37ISPLRR42 pKa = 11.84IYY44 pKa = 10.97VVGCPFLFVV53 pKa = 3.5

Molecular weight: 6.05 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4085

0

4085

1342224

29

4767

328.6

37.1

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.214 ± 0.035

0.722 ± 0.011

5.631 ± 0.035

6.94 ± 0.035

5.404 ± 0.033

6.717 ± 0.036

1.826 ± 0.02

7.32 ± 0.032

7.189 ± 0.056

9.693 ± 0.054

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.254 ± 0.02

5.648 ± 0.036

3.577 ± 0.023

3.484 ± 0.022

3.891 ± 0.029

6.559 ± 0.03

5.557 ± 0.049

6.38 ± 0.03

1.149 ± 0.015

3.844 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski