Chryseobacterium sp. FH1

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Weeksellaceae; Chryseobacterium group; Chryseobacterium; unclassified Chryseobacterium

Average proteome isoelectric point is 6.57

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3367 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A085B732|A0A085B732_9FLAO Amino acid racemase OS=Chryseobacterium sp. FH1 OX=1233951 GN=IO90_18840 PE=4 SV=1
MM1 pKa = 6.86KK2 pKa = 9.75TIIIGAIALLTMNFSFAQSNVDD24 pKa = 3.98LSAQIGNLNTATVDD38 pKa = 3.06QTGFMNFNALLQDD51 pKa = 3.98GNRR54 pKa = 11.84NDD56 pKa = 4.49ADD58 pKa = 3.49IDD60 pKa = 3.75QVGWGNSNLALSQGNRR76 pKa = 11.84NSIDD80 pKa = 3.13VDD82 pKa = 2.98QWGIGNSNTTSQYY95 pKa = 10.76GNRR98 pKa = 11.84NSSQTLQVGLFNDD111 pKa = 3.44VDD113 pKa = 3.71QVQIGRR119 pKa = 11.84RR120 pKa = 11.84NDD122 pKa = 3.04ASATQFGMGNTIGQYY137 pKa = 9.68QDD139 pKa = 2.72GRR141 pKa = 11.84RR142 pKa = 11.84NSATAIQVGVDD153 pKa = 3.11NTIWQDD159 pKa = 3.12QYY161 pKa = 11.49GRR163 pKa = 11.84RR164 pKa = 11.84NVAYY168 pKa = 9.7AFQAGSDD175 pKa = 3.78NYY177 pKa = 10.13IHH179 pKa = 6.62QLQDD183 pKa = 3.34GNDD186 pKa = 3.34NSATHH191 pKa = 6.21LQFGDD196 pKa = 3.37SNYY199 pKa = 10.58ADD201 pKa = 3.24SHH203 pKa = 6.82QYY205 pKa = 11.44GNDD208 pKa = 3.0NTTAGLQVGNGNEE221 pKa = 4.16LYY223 pKa = 10.31QYY225 pKa = 11.04QYY227 pKa = 11.84GNGNTAMDD235 pKa = 3.68IQMGDD240 pKa = 2.99SNYY243 pKa = 10.2TDD245 pKa = 3.37VTQTGTSHH253 pKa = 6.9LHH255 pKa = 5.87MGMQAGNNNSLVVNQSNN272 pKa = 2.98

Molecular weight: 29.51 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A085BA57|A0A085BA57_9FLAO Uncharacterized protein OS=Chryseobacterium sp. FH1 OX=1233951 GN=IO90_08585 PE=4 SV=1
MM1 pKa = 7.21TPGRR5 pKa = 11.84EE6 pKa = 4.16KK7 pKa = 10.59PPHH10 pKa = 6.29LLALAPLQRR19 pKa = 11.84RR20 pKa = 11.84GMGFFCIGYY29 pKa = 9.41ILQKK33 pKa = 8.73PSKK36 pKa = 8.46YY37 pKa = 10.71AEE39 pKa = 4.43DD40 pKa = 3.98RR41 pKa = 11.84STASGVANRR50 pKa = 11.84YY51 pKa = 7.75IRR53 pKa = 11.84KK54 pKa = 9.15ILPPTLKK61 pKa = 10.76GGIFPVGLKK70 pKa = 10.18LL71 pKa = 4.29

Molecular weight: 7.84 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3367

0

3367

1084421

54

2373

322.1

36.49

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.944 ± 0.04

0.677 ± 0.011

5.575 ± 0.031

6.78 ± 0.049

5.584 ± 0.036

6.176 ± 0.046

1.58 ± 0.02

8.053 ± 0.043

8.443 ± 0.046

9.136 ± 0.045

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.217 ± 0.023

6.538 ± 0.045

3.3 ± 0.022

3.502 ± 0.024

3.226 ± 0.023

6.755 ± 0.036

5.439 ± 0.041

5.946 ± 0.031

1.026 ± 0.014

4.103 ± 0.029
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski