Halomonas taeanensis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas

Average proteome isoelectric point is 6.0

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3429 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1G7N2X4|A0A1G7N2X4_9GAMM Transcription elongation factor GreB OS=Halomonas taeanensis OX=284577 GN=greB PE=3 SV=1
MM1 pKa = 7.71KK2 pKa = 9.06KK3 pKa = 8.27TLLATAIAGAMVVSASASAATVYY26 pKa = 10.79NQDD29 pKa = 3.01GTKK32 pKa = 10.43LDD34 pKa = 3.43IYY36 pKa = 11.42GNIQMVYY43 pKa = 10.28TNINDD48 pKa = 3.92AAGDD52 pKa = 4.09SEE54 pKa = 6.59DD55 pKa = 4.82EE56 pKa = 4.12ITDD59 pKa = 3.32NGTTFGFAAEE69 pKa = 4.18HH70 pKa = 7.0AITSDD75 pKa = 2.92VTGYY79 pKa = 9.51MKK81 pKa = 11.03LEE83 pKa = 4.02FDD85 pKa = 5.9GIQADD90 pKa = 4.0EE91 pKa = 4.36KK92 pKa = 10.33KK93 pKa = 7.5TTGFDD98 pKa = 3.53DD99 pKa = 5.33GGDD102 pKa = 3.49QAYY105 pKa = 10.47VGAKK109 pKa = 10.24GSFGDD114 pKa = 3.92VRR116 pKa = 11.84LGSYY120 pKa = 10.15DD121 pKa = 3.62QLIDD125 pKa = 4.93DD126 pKa = 5.85WIQDD130 pKa = 3.91PITNNEE136 pKa = 3.93YY137 pKa = 10.85FDD139 pKa = 5.56ASDD142 pKa = 3.34STYY145 pKa = 11.57DD146 pKa = 3.21RR147 pKa = 11.84TNDD150 pKa = 3.43NNVGSIRR157 pKa = 11.84EE158 pKa = 4.13TDD160 pKa = 3.12KK161 pKa = 10.77VTYY164 pKa = 9.0TSPSFGGLQFAVGSQYY180 pKa = 11.19KK181 pKa = 10.58GDD183 pKa = 4.13AEE185 pKa = 4.44DD186 pKa = 4.72EE187 pKa = 4.32NVTDD191 pKa = 3.5SGEE194 pKa = 3.8ASFFGGAKK202 pKa = 7.75YY203 pKa = 8.77TVGAFSIAAVYY214 pKa = 10.89DD215 pKa = 3.63NLDD218 pKa = 3.61TFDD221 pKa = 3.67ATTTPEE227 pKa = 3.92TDD229 pKa = 3.57FGDD232 pKa = 3.8QYY234 pKa = 11.86GVTAQYY240 pKa = 9.28TAGALRR246 pKa = 11.84LSAKK250 pKa = 9.44YY251 pKa = 10.46EE252 pKa = 3.96KK253 pKa = 10.58FDD255 pKa = 4.95DD256 pKa = 4.83GSSAEE261 pKa = 3.98NDD263 pKa = 2.87VDD265 pKa = 5.13FAALGARR272 pKa = 11.84YY273 pKa = 9.24GYY275 pKa = 11.56GMGDD279 pKa = 3.04VYY281 pKa = 11.38GAVQEE286 pKa = 4.23VSYY289 pKa = 11.17DD290 pKa = 3.27EE291 pKa = 4.53SGRR294 pKa = 11.84DD295 pKa = 3.38DD296 pKa = 3.59RR297 pKa = 11.84TEE299 pKa = 4.08VIVGGTYY306 pKa = 10.41NISSAMYY313 pKa = 9.16TYY315 pKa = 10.54IEE317 pKa = 4.31VANYY321 pKa = 10.15DD322 pKa = 3.98ADD324 pKa = 3.67EE325 pKa = 4.41DD326 pKa = 4.69AYY328 pKa = 11.16DD329 pKa = 4.15GVATGITYY337 pKa = 9.77LFF339 pKa = 4.37

Molecular weight: 36.29 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1G7S8V3|A0A1G7S8V3_9GAMM Iron complex transport system permease protein OS=Halomonas taeanensis OX=284577 GN=SAMN05216571_10624 PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.46RR12 pKa = 11.84KK13 pKa = 9.37RR14 pKa = 11.84NHH16 pKa = 5.37GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.3NGRR28 pKa = 11.84AVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.93GRR39 pKa = 11.84KK40 pKa = 8.85RR41 pKa = 11.84LSAA44 pKa = 3.96

Molecular weight: 5.16 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3429

0

3429

1106853

29

2858

322.8

35.33

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.401 ± 0.055

0.928 ± 0.013

6.004 ± 0.046

6.386 ± 0.041

3.378 ± 0.027

8.228 ± 0.041

2.392 ± 0.025

4.647 ± 0.032

2.862 ± 0.032

11.445 ± 0.056

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.534 ± 0.022

2.565 ± 0.022

4.864 ± 0.029

3.942 ± 0.028

7.003 ± 0.04

5.701 ± 0.03

4.961 ± 0.026

7.008 ± 0.035

1.424 ± 0.018

2.327 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski