South African cassava mosaic virus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus

Average proteome isoelectric point is 8.09

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q9IN43|Q9IN43_9GEMI Transcriptional activator protein OS=South African cassava mosaic virus OX=63723 GN=AC2 PE=3 SV=1
MM1 pKa = 7.35PRR3 pKa = 11.84AGRR6 pKa = 11.84FSIKK10 pKa = 10.18AKK12 pKa = 10.62NYY14 pKa = 8.28FLTYY18 pKa = 9.38PKK20 pKa = 9.76CTLSKK25 pKa = 10.51EE26 pKa = 4.07AALDD30 pKa = 3.53QLRR33 pKa = 11.84QLQTPTNKK41 pKa = 10.03LFIKK45 pKa = 10.0ICRR48 pKa = 11.84EE49 pKa = 3.52LHH51 pKa = 6.26EE52 pKa = 4.93NGEE55 pKa = 4.34PHH57 pKa = 6.73LHH59 pKa = 6.75ALIQFEE65 pKa = 4.49GKK67 pKa = 10.14YY68 pKa = 10.4NCTNQRR74 pKa = 11.84FFDD77 pKa = 5.08LISPSRR83 pKa = 11.84STHH86 pKa = 4.86FHH88 pKa = 6.77PNIQGAKK95 pKa = 9.25SSSDD99 pKa = 3.17VKK101 pKa = 11.17SYY103 pKa = 11.2LDD105 pKa = 3.72KK106 pKa = 11.6DD107 pKa = 3.4GDD109 pKa = 4.14TIQWGEE115 pKa = 3.74FQIDD119 pKa = 3.16GRR121 pKa = 11.84SARR124 pKa = 11.84GGQQSANDD132 pKa = 4.12AYY134 pKa = 10.91AKK136 pKa = 10.52ALNAASKK143 pKa = 9.7TEE145 pKa = 3.75ALNVIRR151 pKa = 11.84EE152 pKa = 4.21LAPKK156 pKa = 10.52DD157 pKa = 3.64FVLQFHH163 pKa = 6.68NLNSNLDD170 pKa = 4.08RR171 pKa = 11.84IFQEE175 pKa = 3.93PPIPYY180 pKa = 9.4ISPFLSSSFTHH191 pKa = 5.96VPEE194 pKa = 4.46EE195 pKa = 4.19LEE197 pKa = 4.11DD198 pKa = 3.63WVSEE202 pKa = 3.99NVMGFAARR210 pKa = 11.84PWRR213 pKa = 11.84PSSIVIEE220 pKa = 4.46GDD222 pKa = 3.11SRR224 pKa = 11.84TGKK227 pKa = 8.52TMWARR232 pKa = 11.84SLGPHH237 pKa = 6.71NYY239 pKa = 10.18LCGHH243 pKa = 7.38LDD245 pKa = 4.18LSPKK249 pKa = 10.15VYY251 pKa = 11.07SNDD254 pKa = 2.25AWYY257 pKa = 10.92NVIDD261 pKa = 5.2DD262 pKa = 4.41VDD264 pKa = 3.61PHH266 pKa = 5.85YY267 pKa = 11.0LKK269 pKa = 10.7HH270 pKa = 6.2FKK272 pKa = 10.7EE273 pKa = 4.46FMGAQRR279 pKa = 11.84DD280 pKa = 3.81WQSNTKK286 pKa = 9.26YY287 pKa = 10.63GKK289 pKa = 9.49PIQIKK294 pKa = 10.42GGIPTIFLCNPGPTSSYY311 pKa = 11.31KK312 pKa = 10.67EE313 pKa = 3.89FLDD316 pKa = 3.75EE317 pKa = 5.39EE318 pKa = 4.82KK319 pKa = 11.0NQSLKK324 pKa = 10.9AWALKK329 pKa = 10.07NATFITLHH337 pKa = 6.27EE338 pKa = 4.47PLFSSAHH345 pKa = 4.89QSPTPHH351 pKa = 7.15RR352 pKa = 11.84EE353 pKa = 3.83DD354 pKa = 3.16

Molecular weight: 40.29 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q9IN46|Q9IN46_9GEMI Protein V2 OS=South African cassava mosaic virus OX=63723 GN=AV2 PE=3 SV=1
MM1 pKa = 7.71SKK3 pKa = 10.35RR4 pKa = 11.84PADD7 pKa = 3.94IIISTPVSKK16 pKa = 10.56VRR18 pKa = 11.84RR19 pKa = 11.84RR20 pKa = 11.84LNFDD24 pKa = 3.38SPFSSRR30 pKa = 11.84AAVPIVQGTNKK41 pKa = 9.26RR42 pKa = 11.84RR43 pKa = 11.84SWTFRR48 pKa = 11.84PMYY51 pKa = 9.51RR52 pKa = 11.84KK53 pKa = 9.28PRR55 pKa = 11.84MYY57 pKa = 11.01RR58 pKa = 11.84MFKK61 pKa = 10.72SPDD64 pKa = 3.23VPRR67 pKa = 11.84GCEE70 pKa = 4.34GPCKK74 pKa = 9.32VQSYY78 pKa = 6.99EE79 pKa = 3.67QRR81 pKa = 11.84DD82 pKa = 4.06DD83 pKa = 3.74VKK85 pKa = 9.69HH86 pKa = 5.74TGSVRR91 pKa = 11.84CVSDD95 pKa = 3.11VTRR98 pKa = 11.84GSGITHH104 pKa = 6.35RR105 pKa = 11.84VGKK108 pKa = 9.68RR109 pKa = 11.84FCIKK113 pKa = 10.26SIYY116 pKa = 9.86VLGKK120 pKa = 9.13IWMDD124 pKa = 3.49EE125 pKa = 4.09NIKK128 pKa = 10.06KK129 pKa = 9.97QNHH132 pKa = 4.95TNQVMFFLVRR142 pKa = 11.84DD143 pKa = 3.63RR144 pKa = 11.84RR145 pKa = 11.84PYY147 pKa = 10.91GNSPMDD153 pKa = 3.85FGQVFNMFDD162 pKa = 3.99NEE164 pKa = 4.11PSTATVKK171 pKa = 10.81NDD173 pKa = 2.71LRR175 pKa = 11.84DD176 pKa = 3.32RR177 pKa = 11.84YY178 pKa = 9.7RR179 pKa = 11.84VMRR182 pKa = 11.84KK183 pKa = 7.56FHH185 pKa = 5.89ATVVGGPSGMKK196 pKa = 9.32EE197 pKa = 3.6QALVRR202 pKa = 11.84RR203 pKa = 11.84FFRR206 pKa = 11.84INNHH210 pKa = 4.14VVYY213 pKa = 10.43NHH215 pKa = 5.84QEE217 pKa = 3.45AAKK220 pKa = 10.4YY221 pKa = 9.25EE222 pKa = 4.13NHH224 pKa = 6.46TEE226 pKa = 3.99NALLLYY232 pKa = 7.29MACTHH237 pKa = 7.07ASNPVYY243 pKa = 9.86ATLKK247 pKa = 9.47IRR249 pKa = 11.84IYY251 pKa = 10.65FYY253 pKa = 11.26DD254 pKa = 3.34AVTNN258 pKa = 4.16

Molecular weight: 30.07 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8

0

8

1660

98

354

207.5

23.74

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.06 ± 0.697

1.807 ± 0.33

5.301 ± 0.416

4.217 ± 0.427

4.458 ± 0.389

5.181 ± 0.704

3.735 ± 0.862

5.602 ± 0.589

5.663 ± 0.399

7.59 ± 0.769

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.289 ± 0.494

5.361 ± 0.479

6.325 ± 0.434

4.458 ± 0.573

7.289 ± 0.83

8.434 ± 0.983

6.265 ± 0.713

5.783 ± 1.039

1.205 ± 0.187

3.976 ± 0.641
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski