Pantoea phage vB_PagS_AAS23

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Drexlerviridae; Sauletekiovirus; Pantoea virus AAS23

Average proteome isoelectric point is 6.69

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 92 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3S9U7V1|A0A3S9U7V1_9CAUD Uncharacterized protein OS=Pantoea phage vB_PagS_AAS23 OX=2499073 GN=AAS23_gp91 PE=4 SV=1
MM1 pKa = 7.91EE2 pKa = 4.46IQEE5 pKa = 4.31LNEE8 pKa = 3.8DD9 pKa = 3.95LMWILFQGMVCTALVDD25 pKa = 3.85AGFNGDD31 pKa = 3.68AWNMASCLDD40 pKa = 3.68MSFDD44 pKa = 4.01DD45 pKa = 4.07ARR47 pKa = 11.84DD48 pKa = 3.58YY49 pKa = 11.5AVEE52 pKa = 4.08DD53 pKa = 3.12WGSIIKK59 pKa = 10.5EE60 pKa = 3.92EE61 pKa = 4.0LNEE64 pKa = 3.84YY65 pKa = 10.49RR66 pKa = 11.84EE67 pKa = 4.23EE68 pKa = 4.23NPNSFSNLHH77 pKa = 5.76

Molecular weight: 8.9 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3S9U7Q6|A0A3S9U7Q6_9CAUD Putative phosphoesterase OS=Pantoea phage vB_PagS_AAS23 OX=2499073 GN=AAS23_gp38 PE=4 SV=1
MM1 pKa = 7.57SEE3 pKa = 4.54RR4 pKa = 11.84IAVSTGEE11 pKa = 3.73PDD13 pKa = 3.71KK14 pKa = 11.2RR15 pKa = 11.84PKK17 pKa = 10.43NGNNGTRR24 pKa = 11.84RR25 pKa = 11.84GPDD28 pKa = 2.73KK29 pKa = 10.72RR30 pKa = 11.84PRR32 pKa = 11.84KK33 pKa = 9.54RR34 pKa = 11.84CIGYY38 pKa = 9.78DD39 pKa = 3.16ILKK42 pKa = 10.62DD43 pKa = 3.63EE44 pKa = 4.9VKK46 pKa = 10.81ASLANRR52 pKa = 11.84LQTVLAYY59 pKa = 10.33YY60 pKa = 7.55GTKK63 pKa = 10.59AEE65 pKa = 3.95MGRR68 pKa = 11.84RR69 pKa = 11.84LKK71 pKa = 10.82VSKK74 pKa = 8.9QTINAWIMRR83 pKa = 11.84GRR85 pKa = 11.84ISTEE89 pKa = 3.44GARR92 pKa = 11.84RR93 pKa = 11.84VHH95 pKa = 6.88RR96 pKa = 11.84DD97 pKa = 3.17YY98 pKa = 11.19IRR100 pKa = 11.84NGFSGYY106 pKa = 9.51RR107 pKa = 11.84ASFCRR112 pKa = 11.84PDD114 pKa = 3.91LRR116 pKa = 11.84FDD118 pKa = 4.13ANGKK122 pKa = 9.47AVSQRR127 pKa = 11.84CNRR130 pKa = 11.84KK131 pKa = 10.45DD132 pKa = 3.31MVKK135 pKa = 10.77

Molecular weight: 15.46 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

92

0

92

16002

27

1178

173.9

19.38

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.055 ± 0.528

1.487 ± 0.184

6.018 ± 0.226

6.299 ± 0.27

4.087 ± 0.178

7.268 ± 0.271

1.856 ± 0.234

6.262 ± 0.157

6.449 ± 0.295

6.93 ± 0.222

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.031 ± 0.167

4.556 ± 0.208

3.525 ± 0.246

4.187 ± 0.313

5.281 ± 0.214

6.83 ± 0.267

5.181 ± 0.261

6.905 ± 0.216

1.381 ± 0.092

3.412 ± 0.169
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski