Gammapapillomavirus 23

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Gammapapillomavirus

Average proteome isoelectric point is 6.03

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2D2AM71|A0A2D2AM71_9PAPI Protein E7 OS=Gammapapillomavirus 23 OX=1961680 GN=E7 PE=3 SV=1
MM1 pKa = 7.45TSLKK5 pKa = 9.93RR6 pKa = 11.84RR7 pKa = 11.84KK8 pKa = 9.55RR9 pKa = 11.84DD10 pKa = 3.47TVDD13 pKa = 2.81NLYY16 pKa = 10.32RR17 pKa = 11.84QCQLGADD24 pKa = 4.28CPPDD28 pKa = 3.29VRR30 pKa = 11.84NKK32 pKa = 10.25VEE34 pKa = 4.05GTTLADD40 pKa = 3.71KK41 pKa = 10.79LLQAFGSIIFLGGLGIGSGSGSGAVTAGRR70 pKa = 11.84TIPDD74 pKa = 4.56LAPDD78 pKa = 4.12ATPIRR83 pKa = 11.84PTRR86 pKa = 11.84PLRR89 pKa = 11.84PSSGPNTTRR98 pKa = 11.84PFSVPIDD105 pKa = 4.0RR106 pKa = 11.84IGVPGAGGRR115 pKa = 11.84PVTIDD120 pKa = 3.23ATSSSIVPLTEE131 pKa = 4.07AVPDD135 pKa = 3.96TVITLGDD142 pKa = 3.53PTIGVTTDD150 pKa = 2.68IAVDD154 pKa = 3.46VNPIEE159 pKa = 5.26LEE161 pKa = 4.58PINQGPDD168 pKa = 2.88TPAIINVTPIEE179 pKa = 4.35PPPVRR184 pKa = 11.84ILYY187 pKa = 10.48SDD189 pKa = 3.47TTTYY193 pKa = 11.18APPEE197 pKa = 4.08TVQIAFTDD205 pKa = 3.67PNLNVFVDD213 pKa = 4.25PASTGQHH220 pKa = 5.78IGLEE224 pKa = 4.38EE225 pKa = 4.72IEE227 pKa = 5.14LDD229 pKa = 4.06TIGGPSTFEE238 pKa = 3.8IEE240 pKa = 4.02EE241 pKa = 4.24AAPTTSTPLEE251 pKa = 4.14RR252 pKa = 11.84LGQVYY257 pKa = 10.23NRR259 pKa = 11.84ARR261 pKa = 11.84QYY263 pKa = 10.24YY264 pKa = 7.78NRR266 pKa = 11.84RR267 pKa = 11.84VQQVPTRR274 pKa = 11.84NIDD277 pKa = 3.57FLGQPSRR284 pKa = 11.84AVLFGFEE291 pKa = 4.34NPAFLDD297 pKa = 3.85DD298 pKa = 3.63VTLEE302 pKa = 4.05FEE304 pKa = 3.78QDD306 pKa = 3.37LRR308 pKa = 11.84EE309 pKa = 4.16VAAAPDD315 pKa = 3.44EE316 pKa = 4.38DD317 pKa = 4.16FRR319 pKa = 11.84DD320 pKa = 3.64VRR322 pKa = 11.84QLHH325 pKa = 6.26RR326 pKa = 11.84PTFSITDD333 pKa = 3.3EE334 pKa = 4.08GLIRR338 pKa = 11.84LSRR341 pKa = 11.84LGSRR345 pKa = 11.84ATMQTRR351 pKa = 11.84SGRR354 pKa = 11.84VFGSDD359 pKa = 2.15AHH361 pKa = 6.41FYY363 pKa = 10.68YY364 pKa = 10.54DD365 pKa = 3.26VSEE368 pKa = 4.21IPEE371 pKa = 4.17AGEE374 pKa = 4.92IEE376 pKa = 4.37MQDD379 pKa = 3.48LVTPGVPYY387 pKa = 10.24TIVDD391 pKa = 3.9PQAEE395 pKa = 4.37SSFVNALADD404 pKa = 3.48VTLFTEE410 pKa = 4.41DD411 pKa = 3.7QLVDD415 pKa = 4.23FYY417 pKa = 12.02NEE419 pKa = 4.2SFDD422 pKa = 3.73NAQLILEE429 pKa = 4.61GQTEE433 pKa = 4.16AEE435 pKa = 4.0EE436 pKa = 5.56RR437 pKa = 11.84YY438 pKa = 7.83TFPIPISTTAIKK450 pKa = 10.37PFVVDD455 pKa = 3.3IGNGIFYY462 pKa = 10.49SSPTQISTNNYY473 pKa = 8.06SPKK476 pKa = 10.08FPFIPVSPGVTINMYY491 pKa = 10.83SDD493 pKa = 5.37DD494 pKa = 4.42YY495 pKa = 11.78YY496 pKa = 11.61LDD498 pKa = 4.28PSLLKK503 pKa = 10.39RR504 pKa = 11.84KK505 pKa = 9.64RR506 pKa = 11.84KK507 pKa = 10.04RR508 pKa = 11.84SDD510 pKa = 3.14DD511 pKa = 3.61FF512 pKa = 6.03

Molecular weight: 56.02 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2D2AM70|A0A2D2AM70_9PAPI Minor capsid protein L2 OS=Gammapapillomavirus 23 OX=1961680 GN=L2 PE=3 SV=1
MM1 pKa = 7.03NQADD5 pKa = 4.0LTSRR9 pKa = 11.84SDD11 pKa = 3.46ALQEE15 pKa = 3.93RR16 pKa = 11.84LMNLYY21 pKa = 10.43EE22 pKa = 4.63SGAKK26 pKa = 8.78TLEE29 pKa = 3.77AQIEE33 pKa = 4.15HH34 pKa = 5.96WQLVRR39 pKa = 11.84KK40 pKa = 10.11LNVLYY45 pKa = 10.7YY46 pKa = 8.8YY47 pKa = 10.76ARR49 pKa = 11.84KK50 pKa = 9.81EE51 pKa = 4.21KK52 pKa = 10.35FSHH55 pKa = 7.04LGLQPLPSLTVSEE68 pKa = 4.7YY69 pKa = 10.45KK70 pKa = 10.56SKK72 pKa = 10.8EE73 pKa = 3.76AIQIVLLLRR82 pKa = 11.84SLQNSPYY89 pKa = 10.83AEE91 pKa = 4.3EE92 pKa = 4.17EE93 pKa = 4.25WNLSDD98 pKa = 3.83TSAEE102 pKa = 4.53LIHH105 pKa = 6.36TPPKK109 pKa = 9.49NTFKK113 pKa = 10.76KK114 pKa = 9.68GPYY117 pKa = 9.47RR118 pKa = 11.84VDD120 pKa = 2.16VWFDD124 pKa = 3.65HH125 pKa = 6.58NPQNSFPYY133 pKa = 9.31TNYY136 pKa = 10.99DD137 pKa = 3.9FIYY140 pKa = 9.39YY141 pKa = 9.64QDD143 pKa = 4.78YY144 pKa = 11.12DD145 pKa = 4.26EE146 pKa = 4.82QWHH149 pKa = 5.54KK150 pKa = 9.39TAGLVDD156 pKa = 3.44INGFYY161 pKa = 10.96YY162 pKa = 10.39EE163 pKa = 4.76EE164 pKa = 4.72PNGDD168 pKa = 3.02RR169 pKa = 11.84VYY171 pKa = 11.39YY172 pKa = 10.1FLFEE176 pKa = 4.43GDD178 pKa = 3.05AARR181 pKa = 11.84YY182 pKa = 10.03GEE184 pKa = 4.22TGQWTVQFKK193 pKa = 9.07NTTLSTSIPSSHH205 pKa = 6.75RR206 pKa = 11.84PQSTISPQGSISSSSDD222 pKa = 3.34SISPTQSFNSKK233 pKa = 9.64HH234 pKa = 5.75SRR236 pKa = 11.84SHH238 pKa = 5.91EE239 pKa = 4.2SEE241 pKa = 4.05EE242 pKa = 4.62GNASSSTGTPPQTPIRR258 pKa = 11.84QRR260 pKa = 11.84RR261 pKa = 11.84RR262 pKa = 11.84RR263 pKa = 11.84RR264 pKa = 11.84EE265 pKa = 4.02GEE267 pKa = 3.9PTSTTGEE274 pKa = 3.84GSRR277 pKa = 11.84AKK279 pKa = 10.06RR280 pKa = 11.84RR281 pKa = 11.84RR282 pKa = 11.84GGHH285 pKa = 4.73TPVVRR290 pKa = 11.84AGVSAAEE297 pKa = 3.99VGSRR301 pKa = 11.84HH302 pKa = 6.07RR303 pKa = 11.84GVPTSGLTRR312 pKa = 11.84LARR315 pKa = 11.84LEE317 pKa = 4.14AEE319 pKa = 4.35ARR321 pKa = 11.84DD322 pKa = 3.73PLILIFKK329 pKa = 9.89GRR331 pKa = 11.84SNQLKK336 pKa = 8.03CWRR339 pKa = 11.84YY340 pKa = 9.77RR341 pKa = 11.84LPKK344 pKa = 10.45DD345 pKa = 3.46SFNVATTVFRR355 pKa = 11.84WAGEE359 pKa = 4.19EE360 pKa = 4.02EE361 pKa = 4.19DD362 pKa = 5.68DD363 pKa = 4.75SYY365 pKa = 11.78LSHH368 pKa = 7.28RR369 pKa = 11.84MLVAFNNQTQRR380 pKa = 11.84KK381 pKa = 8.19YY382 pKa = 10.12FLKK385 pKa = 10.47SVSIPRR391 pKa = 11.84GVSFAYY397 pKa = 10.13GQLDD401 pKa = 3.52SLL403 pKa = 4.56

Molecular weight: 46.02 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

2433

97

604

347.6

39.53

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.425 ± 0.358

2.261 ± 0.829

6.535 ± 0.528

6.494 ± 0.296

4.809 ± 0.551

5.302 ± 0.767

1.644 ± 0.302

5.179 ± 0.593

5.014 ± 0.889

9.042 ± 0.601

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.808 ± 0.348

5.302 ± 0.567

6.247 ± 1.053

4.316 ± 0.414

6.042 ± 0.671

6.987 ± 0.819

6.864 ± 0.598

5.59 ± 0.443

1.315 ± 0.34

3.822 ± 0.421
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski