Lactobacillus versmoldensis DSM 14857 = KCTC 3814

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Companilactobacillus; Companilactobacillus versmoldensis

Average proteome isoelectric point is 6.44

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2261 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0R1SDH1|A0A0R1SDH1_9LACO Na(+) H(+) antiporter OS=Lactobacillus versmoldensis DSM 14857 = KCTC 3814 OX=1423815 GN=FC27_GL002048 PE=4 SV=1
MM1 pKa = 7.17TKK3 pKa = 10.51VKK5 pKa = 9.98IVYY8 pKa = 10.36ASITGNDD15 pKa = 2.9EE16 pKa = 4.44DD17 pKa = 3.41IAYY20 pKa = 10.67VLTEE24 pKa = 4.18KK25 pKa = 10.94FEE27 pKa = 4.17EE28 pKa = 4.32LNADD32 pKa = 3.5VEE34 pKa = 4.45MSEE37 pKa = 5.04VSQTDD42 pKa = 3.24PSDD45 pKa = 4.53FEE47 pKa = 5.2DD48 pKa = 5.09ADD50 pKa = 3.35ICIIASYY57 pKa = 9.46TYY59 pKa = 10.42DD60 pKa = 3.14QGIVPEE66 pKa = 4.23EE67 pKa = 3.88ALDD70 pKa = 4.05FYY72 pKa = 11.51EE73 pKa = 6.12DD74 pKa = 4.48MEE76 pKa = 5.63DD77 pKa = 4.31LDD79 pKa = 4.4LTGKK83 pKa = 10.69VYY85 pKa = 8.15GTCGSGDD92 pKa = 3.3TFYY95 pKa = 11.44EE96 pKa = 4.48DD97 pKa = 3.12FCSAVDD103 pKa = 3.74EE104 pKa = 4.51FAKK107 pKa = 10.44TFDD110 pKa = 3.45EE111 pKa = 4.56TGATKK116 pKa = 10.36GAEE119 pKa = 4.11SVKK122 pKa = 10.36IEE124 pKa = 4.71LEE126 pKa = 4.12PEE128 pKa = 3.54QDD130 pKa = 5.71DD131 pKa = 4.7IDD133 pKa = 4.29NLDD136 pKa = 3.63KK137 pKa = 10.77FAEE140 pKa = 4.11QLYY143 pKa = 8.33KK144 pKa = 9.49TAKK147 pKa = 10.35EE148 pKa = 3.94MGLL151 pKa = 3.59

Molecular weight: 16.85 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0R1SGM0|A0A0R1SGM0_9LACO Uncharacterized protein OS=Lactobacillus versmoldensis DSM 14857 = KCTC 3814 OX=1423815 GN=FC27_GL001598 PE=4 SV=1
MM1 pKa = 7.57KK2 pKa = 9.98PLIQEE7 pKa = 3.7ITKK10 pKa = 9.54EE11 pKa = 4.01QLRR14 pKa = 11.84SDD16 pKa = 3.33IPEE19 pKa = 3.83FRR21 pKa = 11.84AGDD24 pKa = 4.19TIRR27 pKa = 11.84VHH29 pKa = 6.42AKK31 pKa = 8.82VVEE34 pKa = 4.41GTRR37 pKa = 11.84EE38 pKa = 3.89RR39 pKa = 11.84IQLFEE44 pKa = 3.91GVVIKK49 pKa = 10.66RR50 pKa = 11.84HH51 pKa = 4.97GAGISATYY59 pKa = 8.17TVRR62 pKa = 11.84KK63 pKa = 8.0MSSGVGVEE71 pKa = 3.93RR72 pKa = 11.84TFPLNTPRR80 pKa = 11.84VDD82 pKa = 3.3KK83 pKa = 11.12IEE85 pKa = 4.02VVRR88 pKa = 11.84YY89 pKa = 8.01GQVRR93 pKa = 11.84RR94 pKa = 11.84AKK96 pKa = 10.32LYY98 pKa = 8.74YY99 pKa = 10.08LRR101 pKa = 11.84NRR103 pKa = 11.84TGKK106 pKa = 9.82AARR109 pKa = 11.84IKK111 pKa = 10.22EE112 pKa = 3.99RR113 pKa = 11.84RR114 pKa = 11.84RR115 pKa = 11.84DD116 pKa = 3.21II117 pKa = 4.17

Molecular weight: 13.53 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2261

0

2261

688665

50

2960

304.6

34.03

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.995 ± 0.052

0.467 ± 0.013

6.476 ± 0.054

5.455 ± 0.055

4.397 ± 0.04

6.539 ± 0.046

1.911 ± 0.024

7.775 ± 0.051

7.255 ± 0.06

9.379 ± 0.115

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.666 ± 0.027

5.528 ± 0.05

3.516 ± 0.038

4.259 ± 0.045

3.414 ± 0.038

6.563 ± 0.05

5.985 ± 0.047

6.915 ± 0.041

0.941 ± 0.019

3.564 ± 0.035
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski