Lactococcus phage 98102

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae

Average proteome isoelectric point is 6.41

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 53 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1P8BLM4|A0A1P8BLM4_9CAUD Uncharacterized protein OS=Lactococcus phage 98102 OX=1868855 GN=DS98102_22 PE=4 SV=1
MM1 pKa = 7.43KK2 pKa = 10.2LSEE5 pKa = 4.33IEE7 pKa = 4.07AVSPEE12 pKa = 4.07DD13 pKa = 3.31FVVFEE18 pKa = 5.64DD19 pKa = 3.94DD20 pKa = 3.16TPYY23 pKa = 11.05SYY25 pKa = 10.77TIDD28 pKa = 3.41RR29 pKa = 11.84GCRR32 pKa = 11.84EE33 pKa = 3.83NAIEE37 pKa = 4.64VDD39 pKa = 4.65DD40 pKa = 4.4FPKK43 pKa = 10.66LYY45 pKa = 9.59TAEE48 pKa = 3.92QMQEE52 pKa = 3.89YY53 pKa = 10.56AKK55 pKa = 10.64ANCWEE60 pKa = 4.57LINWYY65 pKa = 10.43VEE67 pKa = 3.97TTGDD71 pKa = 3.57VNHH74 pKa = 6.68AAEE77 pKa = 4.34MKK79 pKa = 9.86IWMDD83 pKa = 3.71DD84 pKa = 3.17EE85 pKa = 5.1FGGHH89 pKa = 5.75EE90 pKa = 4.15KK91 pKa = 10.79

Molecular weight: 10.65 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1P8BLP5|A0A1P8BLP5_9CAUD Tail component OS=Lactococcus phage 98102 OX=1868855 GN=DS98102_42 PE=4 SV=1
MM1 pKa = 7.33NNEE4 pKa = 3.88LQEE7 pKa = 3.97LLIRR11 pKa = 11.84IIKK14 pKa = 10.01AAMIAIPIWGLIIMAFIIFIFKK36 pKa = 10.73NDD38 pKa = 3.03IKK40 pKa = 10.88KK41 pKa = 8.34WWRR44 pKa = 11.84NRR46 pKa = 11.84KK47 pKa = 8.79

Molecular weight: 5.73 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

53

0

53

10266

42

929

193.7

21.98

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.332 ± 0.409

0.701 ± 0.127

6.127 ± 0.207

7.783 ± 0.636

4.452 ± 0.194

6.322 ± 0.457

1.305 ± 0.151

6.624 ± 0.283

9.049 ± 0.439

8.095 ± 0.376

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.552 ± 0.175

6.458 ± 0.296

2.513 ± 0.167

4.257 ± 0.234

3.682 ± 0.322

6.351 ± 0.277

6.263 ± 0.275

6.078 ± 0.359

1.461 ± 0.183

3.594 ± 0.274
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski