Xanthophyllomyces dendrorhous virus L1B

Taxonomy: Viruses; Riboviria; Orthornavirae; Duplornaviricota; Chrymotiviricetes; Ghabrivirales; Totiviridae; Totivirus

Average proteome isoelectric point is 6.49

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    

Protein with the lowest isoelectric point:
>tr|H9XW62|H9XW62_9VIRU RNA-directed RNA polymerase OS=Xanthophyllomyces dendrorhous virus L1B OX=1167691 GN=RdRp PE=3 SV=1
MM1 pKa = 6.77LTEE4 pKa = 4.15YY5 pKa = 10.86VNSIVRR11 pKa = 11.84LGNGGAFEE19 pKa = 4.23PTLGDD24 pKa = 3.54GRR26 pKa = 11.84FTMVNKK32 pKa = 9.0TRR34 pKa = 11.84AVMEE38 pKa = 4.36LGGVKK43 pKa = 10.02YY44 pKa = 10.8ASNLEE49 pKa = 4.32LATHH53 pKa = 5.9FQVAKK58 pKa = 10.71AKK60 pKa = 10.32FDD62 pKa = 3.8VIKK65 pKa = 10.41PVARR69 pKa = 11.84SNFYY73 pKa = 10.78GYY75 pKa = 10.39NKK77 pKa = 10.25KK78 pKa = 10.58FIDD81 pKa = 3.78EE82 pKa = 4.37SGVYY86 pKa = 10.23DD87 pKa = 4.23PLRR90 pKa = 11.84AIDD93 pKa = 4.02EE94 pKa = 4.38YY95 pKa = 11.52SRR97 pKa = 11.84TVPGMRR103 pKa = 11.84LGRR106 pKa = 11.84DD107 pKa = 3.49DD108 pKa = 5.87LRR110 pKa = 11.84ALSLTDD116 pKa = 3.75NKK118 pKa = 10.32TDD120 pKa = 3.33SQEE123 pKa = 3.87AYY125 pKa = 8.92IYY127 pKa = 11.26NMLVSWLKK135 pKa = 10.33ARR137 pKa = 11.84LYY139 pKa = 11.26VDD141 pKa = 3.92MKK143 pKa = 11.27GSDD146 pKa = 3.09NKK148 pKa = 9.89FTVKK152 pKa = 10.44YY153 pKa = 10.69SSFKK157 pKa = 9.33DD158 pKa = 3.15THH160 pKa = 7.18VGYY163 pKa = 10.34DD164 pKa = 3.01INDD167 pKa = 3.48SYY169 pKa = 11.62GIEE172 pKa = 4.08SVEE175 pKa = 4.38VNLGPPNPTGEE186 pKa = 4.05AAISLEE192 pKa = 4.56FRR194 pKa = 11.84DD195 pKa = 4.76TNNFWSKK202 pKa = 10.73PYY204 pKa = 10.14VLKK207 pKa = 11.02YY208 pKa = 10.63SNNSMEE214 pKa = 3.92QGSFYY219 pKa = 10.39LAHH222 pKa = 6.3VLGSNGTSGLSADD235 pKa = 3.79IQIDD239 pKa = 3.4ALDD242 pKa = 4.01FNEE245 pKa = 5.14LLLDD249 pKa = 3.87PVGSFPTGAFNIFADD264 pKa = 5.79FWAKK268 pKa = 10.63PNVIWLWIMDD278 pKa = 3.86YY279 pKa = 11.19VRR281 pKa = 11.84LNRR284 pKa = 11.84VEE286 pKa = 4.31QEE288 pKa = 3.75FASAFEE294 pKa = 4.32LLGALATQPLPSYY307 pKa = 10.2HH308 pKa = 7.36EE309 pKa = 4.76SILWSKK315 pKa = 10.88SRR317 pKa = 11.84TVVNMSKK324 pKa = 10.62FSPTRR329 pKa = 11.84ARR331 pKa = 11.84VPANLTGEE339 pKa = 4.45PNVHH343 pKa = 7.11DD344 pKa = 5.51LNAQQFTFDD353 pKa = 4.26EE354 pKa = 4.7EE355 pKa = 4.14KK356 pKa = 10.97SPAGFITASAVLNYY370 pKa = 10.25AFWIGIYY377 pKa = 10.93GMVSNFAEE385 pKa = 4.85DD386 pKa = 3.72CSDD389 pKa = 3.04WTDD392 pKa = 3.49AFISSDD398 pKa = 3.62AEE400 pKa = 4.05LGILSTVEE408 pKa = 3.99ARR410 pKa = 11.84PAMISLVTGKK420 pKa = 8.07EE421 pKa = 4.26TNSCFSNNCFLTYY434 pKa = 10.32DD435 pKa = 4.0LSGMYY440 pKa = 9.56GVKK443 pKa = 10.08QLIVDD448 pKa = 3.95EE449 pKa = 5.51KK450 pKa = 10.68IDD452 pKa = 4.06PNHH455 pKa = 6.94PGVILFDD462 pKa = 3.67TVPAFVSGSLLMGAVATDD480 pKa = 3.8YY481 pKa = 10.87PVLKK485 pKa = 10.25HH486 pKa = 6.39LEE488 pKa = 3.99PHH490 pKa = 4.55QHH492 pKa = 5.76IKK494 pKa = 10.32VEE496 pKa = 4.18RR497 pKa = 11.84DD498 pKa = 3.02GLLGARR504 pKa = 11.84EE505 pKa = 4.17AAMLANSYY513 pKa = 10.95RR514 pKa = 11.84LFGNDD519 pKa = 3.15VIIEE523 pKa = 4.16HH524 pKa = 6.09FRR526 pKa = 11.84SAEE529 pKa = 4.06VYY531 pKa = 7.29PTYY534 pKa = 11.08ANSEE538 pKa = 4.22EE539 pKa = 4.6CVIATYY545 pKa = 10.82EE546 pKa = 3.96LFGRR550 pKa = 11.84TRR552 pKa = 11.84TFDD555 pKa = 2.97IMRR558 pKa = 11.84VSSSYY563 pKa = 10.83KK564 pKa = 8.38RR565 pKa = 11.84TGRR568 pKa = 11.84TYY570 pKa = 9.54EE571 pKa = 4.11IPDD574 pKa = 3.44ATHH577 pKa = 4.98VRR579 pKa = 11.84TYY581 pKa = 10.93GEE583 pKa = 4.64CKK585 pKa = 9.48LTMDD589 pKa = 3.96MPVLAVCGWKK599 pKa = 9.38QRR601 pKa = 11.84KK602 pKa = 5.78TVHH605 pKa = 6.1RR606 pKa = 11.84PKK608 pKa = 10.49MMLDD612 pKa = 3.27SRR614 pKa = 11.84RR615 pKa = 11.84VATKK619 pKa = 9.72FMVGATSGFEE629 pKa = 3.76KK630 pKa = 10.47TRR632 pKa = 11.84FAVYY636 pKa = 10.29NRR638 pKa = 11.84RR639 pKa = 11.84NVMAQGFHH647 pKa = 5.4EE648 pKa = 5.39AKK650 pKa = 10.88AEE652 pKa = 3.94MAPALPLVRR661 pKa = 11.84GSAVSTAPIEE671 pKa = 4.09PVQEE675 pKa = 3.99QEE677 pKa = 3.74PANAVEE683 pKa = 4.19

Molecular weight:
76.22 kDa
Isoelectric point according different methods:






Protein with the highest isoelectric point:
>tr|H9XW62|H9XW62_9VIRU RNA-directed RNA polymerase OS=Xanthophyllomyces dendrorhous virus L1B OX=1167691 GN=RdRp PE=3 SV=1
MM1 pKa = 7.15TSEE4 pKa = 4.63SVQHH8 pKa = 6.44CEE10 pKa = 3.7EE11 pKa = 4.32LNGIKK16 pKa = 9.79IIKK19 pKa = 9.07SVRR22 pKa = 11.84NKK24 pKa = 9.87AMKK27 pKa = 9.44MEE29 pKa = 4.04MRR31 pKa = 11.84DD32 pKa = 3.77GYY34 pKa = 11.83VPMCIKK40 pKa = 10.37ARR42 pKa = 11.84PGIVYY47 pKa = 9.41KK48 pKa = 10.5WEE50 pKa = 3.78ATAFCDD56 pKa = 4.28SEE58 pKa = 4.57YY59 pKa = 11.42VLVGSDD65 pKa = 3.06MSEE68 pKa = 3.81PSEE71 pKa = 4.11NEE73 pKa = 3.84SNVNIMGVLMSGLRR87 pKa = 11.84LAGDD91 pKa = 3.48NCTYY95 pKa = 10.97LYY97 pKa = 11.23AKK99 pKa = 9.77VDD101 pKa = 3.47QYY103 pKa = 12.05LVTRR107 pKa = 11.84KK108 pKa = 9.68KK109 pKa = 10.69AVIAIMTRR117 pKa = 11.84HH118 pKa = 5.5FNGLYY123 pKa = 10.67GSVFLNDD130 pKa = 4.41PLNMEE135 pKa = 4.06AMFRR139 pKa = 11.84DD140 pKa = 3.87RR141 pKa = 11.84APDD144 pKa = 3.74DD145 pKa = 3.65EE146 pKa = 5.97LMPKK150 pKa = 9.88QNYY153 pKa = 8.84EE154 pKa = 4.25KK155 pKa = 10.18ICKK158 pKa = 9.74KK159 pKa = 10.55EE160 pKa = 3.81NTKK163 pKa = 8.48ITAQHH168 pKa = 6.64HH169 pKa = 4.49IHH171 pKa = 5.78FTSEE175 pKa = 3.62EE176 pKa = 4.19VVRR179 pKa = 11.84VLGKK183 pKa = 8.95RR184 pKa = 11.84TAEE187 pKa = 3.77EE188 pKa = 4.3SEE190 pKa = 4.27ATRR193 pKa = 11.84LPADD197 pKa = 3.38ATMSMAAGVLLWYY210 pKa = 10.76NEE212 pKa = 3.91LSPVLKK218 pKa = 10.66EE219 pKa = 4.39MILKK223 pKa = 10.65CGLFKK228 pKa = 11.12SKK230 pKa = 9.6TIQAFKK236 pKa = 10.65KK237 pKa = 8.1IAKK240 pKa = 9.47DD241 pKa = 3.08ISVEE245 pKa = 4.06AKK247 pKa = 9.59SLQNIVQTDD256 pKa = 3.58LRR258 pKa = 11.84SVFEE262 pKa = 4.61IDD264 pKa = 3.28TLINRR269 pKa = 11.84IDD271 pKa = 4.25GEE273 pKa = 4.32VDD275 pKa = 2.53WAEE278 pKa = 4.16EE279 pKa = 3.62RR280 pKa = 11.84DD281 pKa = 3.72HH282 pKa = 6.98RR283 pKa = 11.84VNPNVTNLSYY293 pKa = 11.44SDD295 pKa = 4.08VYY297 pKa = 11.25DD298 pKa = 3.66AAKK301 pKa = 10.61DD302 pKa = 3.45IFLQAAAVGRR312 pKa = 11.84KK313 pKa = 7.88PVSMDD318 pKa = 2.47WDD320 pKa = 4.17KK321 pKa = 11.57YY322 pKa = 8.65WASRR326 pKa = 11.84WQWSAAGSIHH336 pKa = 5.44SQYY339 pKa = 11.04VEE341 pKa = 3.83DD342 pKa = 4.27DD343 pKa = 3.75KK344 pKa = 11.97YY345 pKa = 11.59VIRR348 pKa = 11.84TDD350 pKa = 3.68RR351 pKa = 11.84NLKK354 pKa = 10.3NKK356 pKa = 10.12FIAIANMPKK365 pKa = 9.93YY366 pKa = 10.56GYY368 pKa = 10.58DD369 pKa = 3.04FFMSRR374 pKa = 11.84KK375 pKa = 7.8PQMHH379 pKa = 6.53AWASIKK385 pKa = 10.37YY386 pKa = 8.37EE387 pKa = 3.89WGKK390 pKa = 10.34LRR392 pKa = 11.84AIYY395 pKa = 8.57GTDD398 pKa = 2.92LTSYY402 pKa = 10.13VLSNFAFYY410 pKa = 10.89NCEE413 pKa = 3.54NVLPKK418 pKa = 10.28RR419 pKa = 11.84FPVGKK424 pKa = 9.66DD425 pKa = 2.98ANDD428 pKa = 3.55ANVVNRR434 pKa = 11.84VAGVLKK440 pKa = 10.75DD441 pKa = 3.78RR442 pKa = 11.84LPYY445 pKa = 10.8CLDD448 pKa = 3.63FEE450 pKa = 5.44DD451 pKa = 5.6FNSQHH456 pKa = 6.36SVSSMKK462 pKa = 10.66AVIYY466 pKa = 10.14AYY468 pKa = 10.16GDD470 pKa = 3.32VYY472 pKa = 10.91RR473 pKa = 11.84QVFTEE478 pKa = 3.96QQLEE482 pKa = 4.1ALAWTAEE489 pKa = 4.11SLDD492 pKa = 3.7DD493 pKa = 4.67VSVNDD498 pKa = 4.18NVGLKK503 pKa = 7.8QTYY506 pKa = 9.64KK507 pKa = 11.12SNATLLSGWRR517 pKa = 11.84LTTFVNSVLNAVYY530 pKa = 9.7TDD532 pKa = 4.69KK533 pKa = 11.13ICGEE537 pKa = 4.02AKK539 pKa = 9.81MPGSSLHH546 pKa = 6.44NGDD549 pKa = 4.77DD550 pKa = 3.75VLIGATSMKK559 pKa = 9.81VARR562 pKa = 11.84EE563 pKa = 3.75SLRR566 pKa = 11.84RR567 pKa = 11.84SEE569 pKa = 4.65LYY571 pKa = 10.55GIRR574 pKa = 11.84VQASKK579 pKa = 10.92CAFGGIAEE587 pKa = 4.67FLRR590 pKa = 11.84IDD592 pKa = 3.45HH593 pKa = 6.7ARR595 pKa = 11.84GSKK598 pKa = 9.72GQYY601 pKa = 6.9LTRR604 pKa = 11.84AIATLMHH611 pKa = 6.29SRR613 pKa = 11.84IEE615 pKa = 4.5SKK617 pKa = 10.86LSTDD621 pKa = 3.22ARR623 pKa = 11.84DD624 pKa = 3.81LIEE627 pKa = 4.82AMEE630 pKa = 4.28NRR632 pKa = 11.84FSDD635 pKa = 3.83CLNRR639 pKa = 11.84GMTLDD644 pKa = 3.37TVTKK648 pKa = 10.21LRR650 pKa = 11.84HH651 pKa = 4.95VYY653 pKa = 10.26YY654 pKa = 10.45NRR656 pKa = 11.84QSVICNMPVEE666 pKa = 4.28DD667 pKa = 5.2FYY669 pKa = 11.35RR670 pKa = 11.84IKK672 pKa = 8.18TTHH675 pKa = 6.14RR676 pKa = 11.84VAGGVSEE683 pKa = 6.02AIDD686 pKa = 3.81SDD688 pKa = 3.67VSMSVIRR695 pKa = 11.84GIDD698 pKa = 2.94KK699 pKa = 10.84SFNIKK704 pKa = 9.61IPKK707 pKa = 8.69LQGVHH712 pKa = 7.11DD713 pKa = 4.27YY714 pKa = 11.17ARR716 pKa = 11.84AVAMEE721 pKa = 4.41LEE723 pKa = 4.22MMKK726 pKa = 10.53RR727 pKa = 11.84LDD729 pKa = 4.09YY730 pKa = 10.52ITDD733 pKa = 3.32RR734 pKa = 11.84MYY736 pKa = 10.98KK737 pKa = 8.07ATYY740 pKa = 8.66EE741 pKa = 4.03AVVPKK746 pKa = 9.62TRR748 pKa = 11.84GMTVVPNKK756 pKa = 9.42EE757 pKa = 4.16EE758 pKa = 3.77KK759 pKa = 8.73WCYY762 pKa = 8.5NVKK765 pKa = 10.48AIYY768 pKa = 9.86KK769 pKa = 9.08AFKK772 pKa = 10.75GKK774 pKa = 9.57IQTAGYY780 pKa = 9.69GKK782 pKa = 10.41AALVGMALDD791 pKa = 4.92VIQTSDD797 pKa = 3.29KK798 pKa = 10.87DD799 pKa = 3.86TTLKK803 pKa = 9.92MALARR808 pKa = 11.84SPDD811 pKa = 4.24PIKK814 pKa = 10.66LLRR817 pKa = 11.84YY818 pKa = 9.24LVV820 pKa = 3.53

Molecular weight:
92.93 kDa
Isoelectric point according different methods:






Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

1503

683

820

751.5

84.57

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.649 ± 0.007

1.264 ± 0.247

6.121 ± 0.357

5.855 ± 0.189

4.125 ± 0.828

5.788 ± 0.512

1.863 ± 0.026

5.123 ± 0.468

6.321 ± 1.047

7.784 ± 0.172

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.726 ± 0.323

5.123 ± 0.188

3.593 ± 0.7

2.395 ± 0.221

5.522 ± 0.255

7.252 ± 0.231

5.522 ± 0.308

7.984 ± 0.05

1.397 ± 0.051

4.591 ± 0.127

Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski