Rariglobus hedericola

Taxonomy: cellular organisms; Bacteria; PVC group; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Rariglobus

Average proteome isoelectric point is 6.93

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3424 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A556QM92|A0A556QM92_9BACT 30S ribosomal protein S21 OS=Rariglobus hedericola OX=2597822 GN=rpsU PE=3 SV=1
MM1 pKa = 7.18NVIRR5 pKa = 11.84LLFSSVFLAAATSLSALTIDD25 pKa = 4.29FFDD28 pKa = 4.17VNTSTEE34 pKa = 4.05SGPAQSYY41 pKa = 8.11EE42 pKa = 4.08GPGNGVYY49 pKa = 10.71YY50 pKa = 10.44YY51 pKa = 10.94GSDD54 pKa = 3.29SAGGFTSGGAQFVNYY69 pKa = 9.85YY70 pKa = 10.32NSDD73 pKa = 3.13WGSWSGWAYY82 pKa = 9.69STTADD87 pKa = 3.7SVTAGMANQYY97 pKa = 10.69SAFPGALTTGTPYY110 pKa = 11.08GIAYY114 pKa = 9.21VSSYY118 pKa = 11.17DD119 pKa = 3.5GPTTITLPAGIDD131 pKa = 3.59TPLSLTLTNTTYY143 pKa = 10.88AYY145 pKa = 10.86DD146 pKa = 3.43SMLNGDD152 pKa = 4.12SFAKK156 pKa = 10.48KK157 pKa = 10.15FGGVSGNDD165 pKa = 3.21ADD167 pKa = 4.14WFLLTITGKK176 pKa = 10.3DD177 pKa = 3.2AFNATLGSVEE187 pKa = 5.01FYY189 pKa = 11.0LADD192 pKa = 4.15FRR194 pKa = 11.84FADD197 pKa = 3.69NEE199 pKa = 3.87LDD201 pKa = 4.41YY202 pKa = 10.98IITDD206 pKa = 3.32WTDD209 pKa = 2.51VDD211 pKa = 4.21LTGLGTGVHH220 pKa = 5.28TLEE223 pKa = 4.3FTLTSSDD230 pKa = 3.47SGDD233 pKa = 3.43YY234 pKa = 11.44GMNTPSYY241 pKa = 9.05FALGGVTAVPEE252 pKa = 4.21PSAYY256 pKa = 10.02AALVGAFTLVLALTRR271 pKa = 11.84RR272 pKa = 11.84RR273 pKa = 11.84RR274 pKa = 11.84SS275 pKa = 3.13

Molecular weight: 29.09 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A556QJA4|A0A556QJA4_9BACT Response regulator OS=Rariglobus hedericola OX=2597822 GN=FPL22_11340 PE=4 SV=1
MM1 pKa = 7.15QPTFRR6 pKa = 11.84PHH8 pKa = 5.7RR9 pKa = 11.84LKK11 pKa = 10.64RR12 pKa = 11.84ARR14 pKa = 11.84KK15 pKa = 8.44IGFFARR21 pKa = 11.84KK22 pKa = 7.88ATVGGRR28 pKa = 11.84KK29 pKa = 9.08VLANRR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84KK37 pKa = 8.79GRR39 pKa = 11.84KK40 pKa = 8.81RR41 pKa = 11.84LTVVV45 pKa = 3.08

Molecular weight: 5.32 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3424

0

3424

1258522

22

9126

367.6

40.04

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.409 ± 0.053

0.857 ± 0.014

5.165 ± 0.032

5.236 ± 0.049

4.044 ± 0.024

7.982 ± 0.057

2.117 ± 0.028

5.156 ± 0.033

3.954 ± 0.041

10.342 ± 0.046

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.852 ± 0.021

3.268 ± 0.039

5.215 ± 0.037

3.173 ± 0.022

6.335 ± 0.05

6.225 ± 0.047

6.411 ± 0.079

7.248 ± 0.028

1.533 ± 0.027

2.478 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski