Devosia chinhatensis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Devosiaceae; Devosia

Average proteome isoelectric point is 6.21

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3103 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0F5FHB6|A0A0F5FHB6_9RHIZ 3-oxoacyl-ACP synthase OS=Devosia chinhatensis OX=429727 GN=VE26_15395 PE=3 SV=1
MM1 pKa = 7.79PATGAAIAVLALSMPAMAQEE21 pKa = 4.37SAAFSLPEE29 pKa = 4.38LGYY32 pKa = 10.71DD33 pKa = 3.7YY34 pKa = 11.37DD35 pKa = 3.92ALEE38 pKa = 4.37PVIDD42 pKa = 4.01AQTMEE47 pKa = 4.21LHH49 pKa = 6.35HH50 pKa = 6.74SKK52 pKa = 9.53HH53 pKa = 5.9HH54 pKa = 6.09QSFVDD59 pKa = 3.42NLNNAVEE66 pKa = 5.0DD67 pKa = 3.89GTIPADD73 pKa = 3.65ANVEE77 pKa = 4.09DD78 pKa = 4.8LVASASEE85 pKa = 4.42YY86 pKa = 8.22PTGIRR91 pKa = 11.84NSAGGHH97 pKa = 4.73WNHH100 pKa = 5.88TFFWQIIGPVEE111 pKa = 4.02EE112 pKa = 5.2AGEE115 pKa = 4.19PSDD118 pKa = 5.62DD119 pKa = 3.3FAAAIDD125 pKa = 3.95AVYY128 pKa = 11.0GSMDD132 pKa = 3.34EE133 pKa = 4.22FKK135 pKa = 11.01AAFEE139 pKa = 3.96EE140 pKa = 4.67AGAGRR145 pKa = 11.84FGSGWVWLVVTDD157 pKa = 4.3AGEE160 pKa = 4.18LEE162 pKa = 4.51ITTTPNQDD170 pKa = 3.33NPLMDD175 pKa = 4.15LAEE178 pKa = 4.29VQGTPVLGNDD188 pKa = 3.39VWEE191 pKa = 4.04HH192 pKa = 6.21AYY194 pKa = 10.99YY195 pKa = 9.18LTYY198 pKa = 10.58NNRR201 pKa = 11.84RR202 pKa = 11.84AEE204 pKa = 4.03YY205 pKa = 10.34LSNWWDD211 pKa = 3.37VVNWDD216 pKa = 4.11EE217 pKa = 4.87VSDD220 pKa = 4.66RR221 pKa = 11.84YY222 pKa = 10.57AQALAEE228 pKa = 4.12

Molecular weight: 24.94 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0F5FMZ7|A0A0F5FMZ7_9RHIZ 5-dehydro-2-deoxygluconokinase OS=Devosia chinhatensis OX=429727 GN=VE26_04470 PE=4 SV=1
MM1 pKa = 7.15VLLFVRR7 pKa = 11.84RR8 pKa = 11.84VTFFQTRR15 pKa = 11.84AIAFRR20 pKa = 11.84RR21 pKa = 11.84RR22 pKa = 11.84AQALQGVLFMWTKK35 pKa = 9.74PMFRR39 pKa = 11.84FGLNLLALTAMAVLVLTMAGGISWW63 pKa = 3.66

Molecular weight: 7.24 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3103

0

3103

967854

41

3899

311.9

33.81

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.264 ± 0.06

0.656 ± 0.014

5.885 ± 0.039

5.661 ± 0.044

3.857 ± 0.029

8.627 ± 0.048

1.994 ± 0.019

5.56 ± 0.037

3.039 ± 0.039

10.362 ± 0.055

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.589 ± 0.023

2.81 ± 0.027

4.962 ± 0.035

3.304 ± 0.026

6.616 ± 0.045

5.451 ± 0.034

5.332 ± 0.036

7.488 ± 0.037

1.3 ± 0.018

2.243 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski