Capnocytophaga ochracea (strain ATCC 27872 / DSM 7271 / JCM 12966 / NCTC 12371 / VPI 2845) (Bacteroides ochraceus)

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga; Capnocytophaga ochracea

Average proteome isoelectric point is 6.82

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2171 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|C7M8M1|C7M8M1_CAPOD Peptidyl-prolyl cis-trans isomerase OS=Capnocytophaga ochracea (strain ATCC 27872 / DSM 7271 / JCM 12966 / NCTC 12371 / VPI 2845) OX=521097 GN=Coch_1855 PE=3 SV=1
MM1 pKa = 7.2VYY3 pKa = 10.24KK4 pKa = 10.47FRR6 pKa = 11.84VILDD10 pKa = 3.34VKK12 pKa = 10.59EE13 pKa = 4.43DD14 pKa = 3.55VFRR17 pKa = 11.84DD18 pKa = 3.78IIIQGEE24 pKa = 4.14ATLEE28 pKa = 4.12DD29 pKa = 3.84LHH31 pKa = 8.34NVINQSFGFAGDD43 pKa = 3.71EE44 pKa = 3.98MASFYY49 pKa = 10.78LTDD52 pKa = 3.85EE53 pKa = 4.61DD54 pKa = 4.31WNQGEE59 pKa = 5.09EE60 pKa = 3.72ITLFDD65 pKa = 3.66VSEE68 pKa = 4.36SGEE71 pKa = 3.95MRR73 pKa = 11.84LMEE76 pKa = 4.42EE77 pKa = 4.02TTIEE81 pKa = 4.31SVVSEE86 pKa = 4.69EE87 pKa = 4.2EE88 pKa = 3.86PKK90 pKa = 10.83LLYY93 pKa = 10.78VYY95 pKa = 10.74DD96 pKa = 4.91FMSMWTFFVEE106 pKa = 4.1LVEE109 pKa = 4.55IDD111 pKa = 3.72EE112 pKa = 4.76EE113 pKa = 4.57EE114 pKa = 4.29TGVSYY119 pKa = 9.66PALIYY124 pKa = 10.79AHH126 pKa = 6.73GSIPAEE132 pKa = 4.05APEE135 pKa = 4.23KK136 pKa = 11.14SFVADD141 pKa = 4.29DD142 pKa = 3.58FDD144 pKa = 4.18EE145 pKa = 5.95FEE147 pKa = 6.04DD148 pKa = 4.03EE149 pKa = 5.96FNDD152 pKa = 4.28FDD154 pKa = 6.35LDD156 pKa = 3.79EE157 pKa = 6.22DD158 pKa = 4.84DD159 pKa = 4.65YY160 pKa = 11.96GSFSGEE166 pKa = 3.43EE167 pKa = 4.49YY168 pKa = 10.79YY169 pKa = 11.25

Molecular weight: 19.64 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|C7M5P0|C7M5P0_CAPOD Uncharacterized protein OS=Capnocytophaga ochracea (strain ATCC 27872 / DSM 7271 / JCM 12966 / NCTC 12371 / VPI 2845) OX=521097 GN=Coch_0287 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.59RR3 pKa = 11.84TFQPSKK9 pKa = 9.13RR10 pKa = 11.84KK11 pKa = 9.48RR12 pKa = 11.84RR13 pKa = 11.84NKK15 pKa = 9.49HH16 pKa = 3.94GFRR19 pKa = 11.84EE20 pKa = 4.19RR21 pKa = 11.84MATANGRR28 pKa = 11.84KK29 pKa = 8.93VLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.08GRR39 pKa = 11.84KK40 pKa = 8.3KK41 pKa = 9.83LTVSSEE47 pKa = 3.9PRR49 pKa = 11.84HH50 pKa = 5.77KK51 pKa = 10.61KK52 pKa = 9.84

Molecular weight: 6.26 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2171

0

2171

749313

31

5298

345.1

39.0

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.969 ± 0.051

0.813 ± 0.023

4.999 ± 0.033

6.632 ± 0.056

4.93 ± 0.049

6.367 ± 0.052

1.881 ± 0.028

7.165 ± 0.043

7.611 ± 0.062

9.337 ± 0.077

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.15 ± 0.028

5.523 ± 0.048

3.702 ± 0.035

3.867 ± 0.038

3.888 ± 0.032

5.804 ± 0.033

6.305 ± 0.11

6.509 ± 0.047

1.086 ± 0.018

4.463 ± 0.041
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski