Coriobacteriaceae bacterium BV3Ac1

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; unclassified Coriobacteriaceae

Average proteome isoelectric point is 6.01

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1610 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|U2VJA7|U2VJA7_9ACTN Lipid II isoglutaminyl synthase (glutamine-hydrolyzing) subunit GatD OS=Coriobacteriaceae bacterium BV3Ac1 OX=1111135 GN=gatD PE=3 SV=1
MM1 pKa = 7.39QDD3 pKa = 3.43LVRR6 pKa = 11.84LNVPAEE12 pKa = 3.67PHH14 pKa = 5.24YY15 pKa = 10.84ARR17 pKa = 11.84SVRR20 pKa = 11.84MLAATLAVSCGMSVDD35 pKa = 4.6DD36 pKa = 5.29IEE38 pKa = 4.55DD39 pKa = 3.06VRR41 pKa = 11.84MAAEE45 pKa = 3.91EE46 pKa = 4.54GFVYY50 pKa = 10.53ACSTAPKK57 pKa = 8.77TCGINFGLAPNEE69 pKa = 3.8VTIDD73 pKa = 3.68FDD75 pKa = 5.65LGLQEE80 pKa = 5.72APLDD84 pKa = 3.89QEE86 pKa = 4.32GDD88 pKa = 3.55AEE90 pKa = 4.58LVGDD94 pKa = 4.86LYY96 pKa = 11.48LVALLLEE103 pKa = 4.5AVCDD107 pKa = 3.92EE108 pKa = 4.63FSLIDD113 pKa = 3.88SDD115 pKa = 3.74EE116 pKa = 4.04GSYY119 pKa = 10.85LHH121 pKa = 6.56LVKK124 pKa = 10.19RR125 pKa = 11.84TAHH128 pKa = 5.74VEE130 pKa = 3.86

Molecular weight: 14.09 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|U2U3H4|U2U3H4_9ACTN IstB-like ATP-binding protein OS=Coriobacteriaceae bacterium BV3Ac1 OX=1111135 GN=HMPREF1248_0999 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.42RR3 pKa = 11.84TYY5 pKa = 10.34QPNKK9 pKa = 8.62RR10 pKa = 11.84KK11 pKa = 9.56RR12 pKa = 11.84AKK14 pKa = 8.76THH16 pKa = 5.23GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.27GGRR28 pKa = 11.84AVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84LKK37 pKa = 10.55GRR39 pKa = 11.84KK40 pKa = 9.03KK41 pKa = 10.09LTVV44 pKa = 3.1

Molecular weight: 5.18 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1610

0

1610

533666

37

2021

331.5

36.38

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.428 ± 0.079

1.475 ± 0.027

6.058 ± 0.048

6.302 ± 0.058

3.721 ± 0.041

7.483 ± 0.054

2.22 ± 0.028

5.741 ± 0.061

4.581 ± 0.055

9.723 ± 0.072

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.606 ± 0.031

3.274 ± 0.04

3.981 ± 0.036

3.468 ± 0.035

5.521 ± 0.063

6.374 ± 0.052

5.52 ± 0.052

7.459 ± 0.059

1.088 ± 0.02

2.976 ± 0.038
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski