Bacteroides caccae

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroidia;

Average proteome isoelectric point is 6.5

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4410 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A174PHH8|A0A174PHH8_9BACE OmpA family protein OS=Bacteroides caccae OX=47678 GN=DW080_00610 PE=4 SV=1
MM1 pKa = 7.49LRR3 pKa = 11.84FKK5 pKa = 10.74FGAWAVVLMLAALSFGACSDD25 pKa = 4.11EE26 pKa = 5.83DD27 pKa = 4.73DD28 pKa = 5.41DD29 pKa = 5.4PAFNPPSNITEE40 pKa = 4.19ALKK43 pKa = 10.48QLYY46 pKa = 8.51PAAQNIEE53 pKa = 3.87WEE55 pKa = 4.46MKK57 pKa = 9.9DD58 pKa = 3.3VYY60 pKa = 11.02YY61 pKa = 11.1VADD64 pKa = 3.77CWVADD69 pKa = 4.41DD70 pKa = 4.88EE71 pKa = 5.31LEE73 pKa = 4.1VWFDD77 pKa = 4.44GNANWLMTEE86 pKa = 4.35NEE88 pKa = 4.41LEE90 pKa = 4.67SIDD93 pKa = 3.97SLVPAVYY100 pKa = 8.57TAFNNTKK107 pKa = 8.26YY108 pKa = 10.69SSWVVTDD115 pKa = 3.5VYY117 pKa = 11.58VLVYY121 pKa = 8.64PQNPTEE127 pKa = 4.34SVIQVKK133 pKa = 10.04QGSRR137 pKa = 11.84RR138 pKa = 11.84YY139 pKa = 10.32SLVFSQDD146 pKa = 2.59GGLLHH151 pKa = 7.06EE152 pKa = 5.21KK153 pKa = 10.31DD154 pKa = 3.85ISNGDD159 pKa = 3.5DD160 pKa = 4.1TIWPPAEE167 pKa = 3.8

Molecular weight: 18.89 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A174K0M3|A0A174K0M3_9BACE Anti-sigma factor antagonist OS=Bacteroides caccae OX=47678 GN=btrW_1 PE=3 SV=1
MM1 pKa = 7.17EE2 pKa = 5.67RR3 pKa = 11.84KK4 pKa = 9.32RR5 pKa = 11.84NYY7 pKa = 9.3IEE9 pKa = 5.44KK10 pKa = 10.04VRR12 pKa = 11.84DD13 pKa = 3.22WADD16 pKa = 3.0DD17 pKa = 3.52RR18 pKa = 11.84LRR20 pKa = 11.84RR21 pKa = 11.84MCGRR25 pKa = 11.84ITPGKK30 pKa = 8.59RR31 pKa = 11.84LAVILVMFFFFGGLSIYY48 pKa = 9.37ITVSSIYY55 pKa = 10.61NIGKK59 pKa = 9.55RR60 pKa = 11.84DD61 pKa = 3.69GQRR64 pKa = 11.84LQIEE68 pKa = 5.41HH69 pKa = 6.74IRR71 pKa = 11.84QLPLHH76 pKa = 6.64GNDD79 pKa = 2.91TTKK82 pKa = 10.96NINPLNRR89 pKa = 11.84PQYY92 pKa = 10.61GRR94 pKa = 11.84STEE97 pKa = 4.01KK98 pKa = 10.93

Molecular weight: 11.58 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4410

0

4410

1589254

29

2262

360.4

40.77

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.817 ± 0.035

1.24 ± 0.014

5.465 ± 0.021

6.671 ± 0.039

4.594 ± 0.024

6.715 ± 0.032

1.819 ± 0.014

6.983 ± 0.035

6.818 ± 0.03

9.089 ± 0.039

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.719 ± 0.015

5.237 ± 0.033

3.718 ± 0.019

3.47 ± 0.02

4.617 ± 0.026

6.174 ± 0.03

5.662 ± 0.026

6.363 ± 0.029

1.29 ± 0.015

4.54 ± 0.026
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski