Gordonia phage DelRio

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Betterkatzvirus; unclassified Betterkatzvirus

Average proteome isoelectric point is 6.01

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 75 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A345KW64|A0A345KW64_9CAUD Uncharacterized protein OS=Gordonia phage DelRio OX=2250288 GN=46 PE=4 SV=1
MM1 pKa = 7.2TPDD4 pKa = 3.27VSAVTLTTTYY14 pKa = 8.2TQPADD19 pKa = 3.58GWPLAALDD27 pKa = 3.8AFGIMFAPDD36 pKa = 4.54TITITASADD45 pKa = 3.31TTGTVEE51 pKa = 4.05VLPVVSVAGHH61 pKa = 6.6IGDD64 pKa = 3.83QAVTTSANVGDD75 pKa = 4.24LPAYY79 pKa = 9.39VLEE82 pKa = 4.52LVEE85 pKa = 4.18HH86 pKa = 6.67AKK88 pKa = 10.4LAAAHH93 pKa = 6.45ALAVAA98 pKa = 4.67

Molecular weight: 9.89 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A345KW34|A0A345KW34_9CAUD Uncharacterized protein OS=Gordonia phage DelRio OX=2250288 GN=16 PE=4 SV=1
MM1 pKa = 7.25PRR3 pKa = 11.84VRR5 pKa = 11.84AWLTDD10 pKa = 3.4NLVEE14 pKa = 4.24AEE16 pKa = 4.2VRR18 pKa = 11.84ADD20 pKa = 4.15VPANWTLAAATRR32 pKa = 11.84PLVVVADD39 pKa = 4.35DD40 pKa = 4.71GGPVDD45 pKa = 3.35WPVRR49 pKa = 11.84SEE51 pKa = 3.66HH52 pKa = 6.35TIRR55 pKa = 11.84LVTRR59 pKa = 11.84AKK61 pKa = 10.57SRR63 pKa = 11.84TEE65 pKa = 3.07ARR67 pKa = 11.84TIVRR71 pKa = 11.84LAAGRR76 pKa = 11.84LHH78 pKa = 5.57TAKK81 pKa = 10.7LSGIVVRR88 pKa = 11.84RR89 pKa = 11.84AGGSVVEE96 pKa = 4.63ATDD99 pKa = 3.58KK100 pKa = 11.12ATGAYY105 pKa = 8.52LASVLVPIQARR116 pKa = 11.84TVEE119 pKa = 4.18LL120 pKa = 3.82

Molecular weight: 12.9 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

75

0

75

16089

37

1751

214.5

23.03

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.052 ± 0.406

0.876 ± 0.155

7.21 ± 0.221

5.258 ± 0.26

2.523 ± 0.144

9.404 ± 0.434

2.026 ± 0.198

4.003 ± 0.211

2.946 ± 0.366

7.993 ± 0.233

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.834 ± 0.108

2.704 ± 0.143

5.718 ± 0.335

3.089 ± 0.206

7.378 ± 0.423

5.159 ± 0.266

6.912 ± 0.268

7.993 ± 0.235

2.02 ± 0.112

1.902 ± 0.17
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski