Arthrobacter phage Andrew

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Andrewvirus; Arthrobacter virus Andrew

Average proteome isoelectric point is 6.63

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 71 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3G2KDA3|A0A3G2KDA3_9CAUD Uncharacterized protein OS=Arthrobacter phage Andrew OX=2419946 GN=61 PE=4 SV=1
MM1 pKa = 7.65SEE3 pKa = 3.83WTVKK7 pKa = 10.77GDD9 pKa = 3.69GFAEE13 pKa = 5.01GPTIEE18 pKa = 4.59VEE20 pKa = 4.16NGSTPILVSAVWTNEE35 pKa = 3.52DD36 pKa = 4.01GVCVSVDD43 pKa = 3.39SGDD46 pKa = 3.68EE47 pKa = 3.85PLPARR52 pKa = 11.84VAWRR56 pKa = 11.84VCAAIMDD63 pKa = 4.99LAAMPSPEE71 pKa = 4.46LSSSS75 pKa = 3.26

Molecular weight: 7.84 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3G2KCV5|A0A3G2KCV5_9CAUD Uncharacterized protein OS=Arthrobacter phage Andrew OX=2419946 GN=22 PE=4 SV=1
MM1 pKa = 7.59TGPSPAVRR9 pKa = 11.84RR10 pKa = 11.84QVIARR15 pKa = 11.84DD16 pKa = 3.49LSRR19 pKa = 11.84CQWCGRR25 pKa = 11.84HH26 pKa = 5.33VRR28 pKa = 11.84TDD30 pKa = 3.4SGWYY34 pKa = 9.12SLQHH38 pKa = 5.14RR39 pKa = 11.84RR40 pKa = 11.84ARR42 pKa = 11.84GMGGSKK48 pKa = 10.5DD49 pKa = 3.35KK50 pKa = 10.58ATNQPANLILVHH62 pKa = 5.72GTGTTEE68 pKa = 3.59CHH70 pKa = 5.76GWIEE74 pKa = 4.29SQPAQAIGRR83 pKa = 11.84GFRR86 pKa = 11.84IAAAADD92 pKa = 3.88PAKK95 pKa = 10.43VPYY98 pKa = 9.4MDD100 pKa = 2.94WTGRR104 pKa = 11.84EE105 pKa = 3.81WLLTNDD111 pKa = 3.74GRR113 pKa = 11.84KK114 pKa = 9.4LPPP117 pKa = 4.14

Molecular weight: 12.96 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

71

0

71

12234

33

787

172.3

18.49

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.209 ± 0.443

0.727 ± 0.102

5.583 ± 0.167

6.204 ± 0.383

2.722 ± 0.179

9.833 ± 0.495

1.324 ± 0.124

3.58 ± 0.199

3.588 ± 0.246

9.179 ± 0.302

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.231 ± 0.145

2.33 ± 0.156

5.697 ± 0.3

2.967 ± 0.222

7.209 ± 0.423

5.468 ± 0.254

5.714 ± 0.298

8.378 ± 0.345

2.158 ± 0.131

1.896 ± 0.154
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski