Gilliamella bombicola

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Orbales; Orbaceae; Gilliamella

Average proteome isoelectric point is 6.7

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2103 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1C4BFB1|A0A1C4BFB1_9GAMM PTS system mannose-specific IIA component OS=Gilliamella bombicola OX=1798182 GN=GA0061081_104130 PE=4 SV=1
MM1 pKa = 7.5EE2 pKa = 6.02FDD4 pKa = 3.48TSILCDD10 pKa = 4.03YY11 pKa = 10.26YY12 pKa = 10.5PEE14 pKa = 5.73DD15 pKa = 3.83INVVEE20 pKa = 5.24PIFSNFGGVTSFSGQAVTVKK40 pKa = 10.42CFEE43 pKa = 4.95DD44 pKa = 3.41NGLLYY49 pKa = 10.48EE50 pKa = 4.69ILQSDD55 pKa = 4.62GSGKK59 pKa = 9.89ILVIDD64 pKa = 3.93GGGSVRR70 pKa = 11.84RR71 pKa = 11.84ALIDD75 pKa = 3.75AEE77 pKa = 4.99LIDD80 pKa = 5.52IAIQNQWAGIIVYY93 pKa = 9.72GAVRR97 pKa = 11.84QVDD100 pKa = 4.06YY101 pKa = 10.88LAEE104 pKa = 4.79ADD106 pKa = 3.97IGIQALAAIPVGAEE120 pKa = 3.77DD121 pKa = 3.71QGVGEE126 pKa = 3.91IDD128 pKa = 2.93IRR130 pKa = 11.84VNFGGVTFFSGDD142 pKa = 3.81FIYY145 pKa = 10.94ADD147 pKa = 3.31NTGIILSEE155 pKa = 3.73IALEE159 pKa = 4.46IEE161 pKa = 4.67DD162 pKa = 4.17KK163 pKa = 11.28

Molecular weight: 17.49 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1C3ZG96|A0A1C3ZG96_9GAMM Elongation factor P OS=Gilliamella bombicola OX=1798182 GN=efp PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.68RR12 pKa = 11.84NRR14 pKa = 11.84THH16 pKa = 7.28GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.4NGRR28 pKa = 11.84QVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.44GRR39 pKa = 11.84VRR41 pKa = 11.84LTVASS46 pKa = 3.91

Molecular weight: 5.37 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2103

0

2103

664647

39

2011

316.0

35.37

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.44 ± 0.058

1.139 ± 0.018

5.387 ± 0.039

5.36 ± 0.055

4.31 ± 0.045

6.348 ± 0.053

2.081 ± 0.023

8.224 ± 0.052

6.386 ± 0.045

10.316 ± 0.06

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.419 ± 0.028

5.311 ± 0.042

3.753 ± 0.031

4.532 ± 0.043

3.998 ± 0.038

6.513 ± 0.056

5.459 ± 0.036

6.382 ± 0.046

1.109 ± 0.017

3.533 ± 0.036
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski