Dipodomys ordii (Ord s kangaroo rat)

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Glires; Rodentia

Average proteome isoelectric point is 6.72

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 26567 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1S3GI92|A0A1S3GI92_DIPOR Protein-arginine deiminase OS=Dipodomys ordii OX=10020 GN=Padi1 PE=3 SV=1
MM1 pKa = 7.58TEE3 pKa = 3.84TSVTEE8 pKa = 3.96TSVTEE13 pKa = 4.1TSVTDD18 pKa = 3.59PSMTEE23 pKa = 3.77TSVTGQCDD31 pKa = 3.29RR32 pKa = 11.84DD33 pKa = 3.5QCDD36 pKa = 3.32RR37 pKa = 11.84DD38 pKa = 3.47QCDD41 pKa = 3.29RR42 pKa = 11.84SHH44 pKa = 5.81VTDD47 pKa = 4.68PSVTDD52 pKa = 3.65PSVTEE57 pKa = 4.03TSVTDD62 pKa = 3.68PSVTEE67 pKa = 3.89TSVTEE72 pKa = 4.0TSVTEE77 pKa = 4.0TSVTEE82 pKa = 4.0TSVTEE87 pKa = 4.1TSVTDD92 pKa = 3.68PSVTEE97 pKa = 4.03TSVTDD102 pKa = 3.68PSVTEE107 pKa = 3.89TSVTEE112 pKa = 4.0TSVTEE117 pKa = 4.1TSVTDD122 pKa = 3.85PSVTDD127 pKa = 3.98PSVTDD132 pKa = 3.98PSVTDD137 pKa = 3.98PSVTDD142 pKa = 3.72PSVTDD147 pKa = 3.16QCDD150 pKa = 3.18RR151 pKa = 11.84PQCDD155 pKa = 2.55RR156 pKa = 11.84GQCHH160 pKa = 6.84RR161 pKa = 11.84GQCHH165 pKa = 6.57RR166 pKa = 11.84GQCHH170 pKa = 6.27RR171 pKa = 11.84PQCDD175 pKa = 3.4GDD177 pKa = 3.75PAAPTFIDD185 pKa = 3.76TLDD188 pKa = 3.72CALAA192 pKa = 4.47

Molecular weight: 20.32 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1S3FZU8|A0A1S3FZU8_DIPOR stimulated by retinoic acid gene 6 protein homolog OS=Dipodomys ordii OX=10020 GN=LOC105993383 PE=4 SV=1
MM1 pKa = 7.11SQNPQRR7 pKa = 11.84RR8 pKa = 11.84APSPLPWKK16 pKa = 8.91RR17 pKa = 11.84TSIKK21 pKa = 9.75PPRR24 pKa = 11.84PSTHH28 pKa = 5.92TPRR31 pKa = 11.84TPHH34 pKa = 6.38PAPRR38 pKa = 11.84TPHH41 pKa = 7.09PDD43 pKa = 3.06SAPRR47 pKa = 11.84PLPHH51 pKa = 7.17PSASRR56 pKa = 11.84CRR58 pKa = 11.84SGRR61 pKa = 11.84PGRR64 pKa = 11.84ARR66 pKa = 11.84TRR68 pKa = 11.84QALRR72 pKa = 11.84RR73 pKa = 11.84PPAAPQFLVEE83 pKa = 4.11ATVRR87 pKa = 11.84GPAKK91 pKa = 10.06PPLPRR96 pKa = 11.84TPAVAHH102 pKa = 6.0AHH104 pKa = 5.81RR105 pKa = 11.84PGHH108 pKa = 5.96RR109 pKa = 11.84MTRR112 pKa = 11.84TTPGHH117 pKa = 5.05TRR119 pKa = 11.84RR120 pKa = 11.84PGPGRR125 pKa = 11.84CRR127 pKa = 11.84ASSQTLTRR135 pKa = 11.84RR136 pKa = 11.84SRR138 pKa = 11.84LPWPPPRR145 pKa = 11.84PHH147 pKa = 7.11ARR149 pKa = 11.84RR150 pKa = 11.84LLPRR154 pKa = 11.84GGPGRR159 pKa = 11.84CSFPARR165 pKa = 11.84PPSGARR171 pKa = 11.84RR172 pKa = 11.84AKK174 pKa = 9.67PRR176 pKa = 11.84SGVSRR181 pKa = 11.84RR182 pKa = 11.84RR183 pKa = 11.84RR184 pKa = 11.84RR185 pKa = 11.84HH186 pKa = 4.35RR187 pKa = 11.84RR188 pKa = 11.84RR189 pKa = 11.84RR190 pKa = 11.84RR191 pKa = 11.84PLHH194 pKa = 5.45FTSLPPPSMRR204 pKa = 11.84PSHH207 pKa = 6.85RR208 pKa = 11.84GPPRR212 pKa = 11.84ISWIRR217 pKa = 11.84SRR219 pKa = 4.43

Molecular weight: 24.77 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

19728

6839

26567

15473226

31

34334

582.4

64.91

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.921 ± 0.017

2.198 ± 0.013

4.802 ± 0.011

7.033 ± 0.021

3.675 ± 0.012

6.415 ± 0.019

2.608 ± 0.007

4.377 ± 0.015

5.681 ± 0.019

10.036 ± 0.025

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.207 ± 0.006

3.615 ± 0.011

6.339 ± 0.025

4.817 ± 0.016

5.621 ± 0.014

8.436 ± 0.022

5.354 ± 0.014

6.023 ± 0.014

1.185 ± 0.005

2.65 ± 0.009
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski