Lactobacillus antri DSM 16041

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Limosilactobacillus; Limosilactobacillus antri

Average proteome isoelectric point is 6.91

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2224 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|C8P9V2|C8P9V2_9LACO ATP-grasp domain-containing protein OS=Lactobacillus antri DSM 16041 OX=525309 GN=HMPREF0494_2096 PE=4 SV=1
MM1 pKa = 8.56DD2 pKa = 4.83YY3 pKa = 7.59MTLNNGEE10 pKa = 4.68KK11 pKa = 10.3VPQLGFDD18 pKa = 4.03VYY20 pKa = 10.7QIPNEE25 pKa = 4.16EE26 pKa = 3.96IKK28 pKa = 10.74EE29 pKa = 4.06AVYY32 pKa = 10.31QAVTAGYY39 pKa = 10.17RR40 pKa = 11.84LIDD43 pKa = 3.51TAVSYY48 pKa = 11.36GNEE51 pKa = 4.07AEE53 pKa = 4.33VGAGVARR60 pKa = 11.84AIADD64 pKa = 3.49GLVSRR69 pKa = 11.84EE70 pKa = 3.92DD71 pKa = 4.29LFITTCC77 pKa = 3.64

Molecular weight: 8.38 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|C8P542|C8P542_9LACO UDP-N-acetylmuramyl-tripeptide synthetase OS=Lactobacillus antri DSM 16041 OX=525309 GN=murE PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.6RR3 pKa = 11.84TFQPKK8 pKa = 8.02KK9 pKa = 7.4RR10 pKa = 11.84HH11 pKa = 5.36RR12 pKa = 11.84ARR14 pKa = 11.84VHH16 pKa = 5.84GFRR19 pKa = 11.84KK20 pKa = 10.03RR21 pKa = 11.84MSTSNGRR28 pKa = 11.84KK29 pKa = 8.01VLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84QKK37 pKa = 10.39GRR39 pKa = 11.84KK40 pKa = 8.52VLSAA44 pKa = 4.05

Molecular weight: 5.3 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2224

0

2224

663820

39

2266

298.5

33.21

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.074 ± 0.077

0.641 ± 0.016

5.767 ± 0.056

4.985 ± 0.062

4.027 ± 0.04

6.987 ± 0.05

2.371 ± 0.026

6.31 ± 0.053

5.588 ± 0.052

9.767 ± 0.068

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.551 ± 0.025

4.637 ± 0.049

3.943 ± 0.034

5.154 ± 0.051

4.764 ± 0.054

5.406 ± 0.048

5.985 ± 0.061

7.327 ± 0.045

1.137 ± 0.022

3.582 ± 0.031
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski