Stenotrophomonas phage vB_SmaS_DLP_5

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Delepquintavirus; Stenotrophomonas virus DLP5

Average proteome isoelectric point is 6.41

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 149 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2D2W2X7|A0A2D2W2X7_9CAUD Uncharacterized protein OS=Stenotrophomonas phage vB_SmaS_DLP_5 OX=2044561 GN=DLP05_070 PE=4 SV=1
MM1 pKa = 7.6SDD3 pKa = 3.78EE4 pKa = 3.95GDD6 pKa = 3.05MWVAYY11 pKa = 10.17AHH13 pKa = 6.29TYY15 pKa = 9.67EE16 pKa = 4.12EE17 pKa = 4.66AVAKK21 pKa = 10.08SLPNFPDD28 pKa = 3.53GGRR31 pKa = 11.84VEE33 pKa = 5.04SVDD36 pKa = 3.23RR37 pKa = 11.84DD38 pKa = 3.57ARR40 pKa = 11.84LDD42 pKa = 3.59KK43 pKa = 10.86YY44 pKa = 11.45SPGPAPMWEE53 pKa = 4.29LLALAYY59 pKa = 9.93EE60 pKa = 4.87WVCLNCGALVNEE72 pKa = 4.82DD73 pKa = 3.92LFDD76 pKa = 5.15AEE78 pKa = 5.04EE79 pKa = 3.93EE80 pKa = 4.46RR81 pKa = 11.84EE82 pKa = 4.24LKK84 pKa = 10.55PVFDD88 pKa = 6.46DD89 pKa = 4.89DD90 pKa = 3.87MQLVFCCPEE99 pKa = 3.7CAIEE103 pKa = 4.05YY104 pKa = 9.83EE105 pKa = 4.23RR106 pKa = 11.84EE107 pKa = 3.75QRR109 pKa = 11.84ATFHH113 pKa = 6.72

Molecular weight: 12.97 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2D2W2R2|A0A2D2W2R2_9CAUD Uncharacterized protein OS=Stenotrophomonas phage vB_SmaS_DLP_5 OX=2044561 GN=DLP05_122 PE=4 SV=1
MM1 pKa = 6.98ATRR4 pKa = 11.84RR5 pKa = 11.84APVKK9 pKa = 10.02TPTNVKK15 pKa = 10.59APTEE19 pKa = 4.13TVNQKK24 pKa = 9.65VKK26 pKa = 10.62PGLLKK31 pKa = 10.83ASSNTNQRR39 pKa = 11.84SSTPSIRR46 pKa = 11.84ANTTRR51 pKa = 11.84TTTTKK56 pKa = 10.9

Molecular weight: 6.04 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

149

0

149

30569

32

1251

205.2

22.79

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.895 ± 0.469

1.063 ± 0.102

5.692 ± 0.128

7.04 ± 0.21

3.68 ± 0.134

7.727 ± 0.281

1.937 ± 0.137

4.662 ± 0.145

6.909 ± 0.287

8.322 ± 0.235

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.301 ± 0.117

3.909 ± 0.162

4.439 ± 0.151

4.105 ± 0.203

4.789 ± 0.174

5.558 ± 0.186

5.793 ± 0.176

7.586 ± 0.188

1.472 ± 0.095

3.121 ± 0.148
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski