Marinilabiliaceae bacterium JC017

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroidia; Marinilabiliales; Marinilabiliaceae; unclassified Marinilabiliaceae

Average proteome isoelectric point is 6.69

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4913 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4Q8RMT9|A0A4Q8RMT9_9BACT 4-hydroxy-tetrahydrodipicolinate synthase OS=Marinilabiliaceae bacterium JC017 OX=2234116 GN=dapA PE=3 SV=1
MM1 pKa = 7.5KK2 pKa = 10.2ALKK5 pKa = 10.21FGLLIALVGLFTVSCDD21 pKa = 4.4DD22 pKa = 5.03DD23 pKa = 6.28DD24 pKa = 6.26DD25 pKa = 5.12YY26 pKa = 12.23SLGKK30 pKa = 10.07FIISMGTIEE39 pKa = 5.19GDD41 pKa = 2.94QDD43 pKa = 3.89SYY45 pKa = 11.79IIVTDD50 pKa = 3.17SGDD53 pKa = 3.56RR54 pKa = 11.84LFPSASNVPNYY65 pKa = 9.71PVEE68 pKa = 5.33DD69 pKa = 4.13DD70 pKa = 3.2MRR72 pKa = 11.84VWVNYY77 pKa = 8.8TILGDD82 pKa = 3.61ATDD85 pKa = 4.98NEE87 pKa = 4.44TLDD90 pKa = 3.98YY91 pKa = 10.39YY92 pKa = 11.49VKK94 pKa = 10.67INDD97 pKa = 4.06LSDD100 pKa = 3.57VLTKK104 pKa = 10.6DD105 pKa = 3.05IFQLTDD111 pKa = 3.06ATRR114 pKa = 11.84DD115 pKa = 3.67SIGNDD120 pKa = 3.17PVSISDD126 pKa = 3.12YY127 pKa = 10.34WIARR131 pKa = 11.84DD132 pKa = 3.49YY133 pKa = 11.72LNIGFYY139 pKa = 10.82YY140 pKa = 10.61GGGPGYY146 pKa = 9.58IHH148 pKa = 7.19YY149 pKa = 10.39INLVNDD155 pKa = 3.54EE156 pKa = 4.82NDD158 pKa = 3.53PEE160 pKa = 4.54TEE162 pKa = 4.03DD163 pKa = 3.89GMLILEE169 pKa = 4.9LKK171 pKa = 9.87HH172 pKa = 6.36NKK174 pKa = 9.67NNDD177 pKa = 3.26PYY179 pKa = 11.39NYY181 pKa = 9.96RR182 pKa = 11.84INNWASFDD190 pKa = 3.83LLSIQEE196 pKa = 4.07EE197 pKa = 4.73GKK199 pKa = 10.71DD200 pKa = 3.38EE201 pKa = 4.24VTFLLRR207 pKa = 11.84SIGPSGEE214 pKa = 4.08YY215 pKa = 10.19EE216 pKa = 3.99FEE218 pKa = 4.31KK219 pKa = 10.8EE220 pKa = 3.81VTYY223 pKa = 10.5KK224 pKa = 10.99YY225 pKa = 11.12GLDD228 pKa = 3.46LL229 pKa = 4.98

Molecular weight: 26.01 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4Q8RRE7|A0A4Q8RRE7_9BACT Acetate kinase OS=Marinilabiliaceae bacterium JC017 OX=2234116 GN=ackA PE=3 SV=1
MM1 pKa = 7.31VILPRR6 pKa = 11.84GMVILPRR13 pKa = 11.84GMVILPRR20 pKa = 11.84GMVILPRR27 pKa = 11.84GMVILPRR34 pKa = 11.84GMVILPRR41 pKa = 11.84GMVILPRR48 pKa = 11.84GMVILPRR55 pKa = 11.84GTVILPRR62 pKa = 11.84GTVILPRR69 pKa = 11.84GTVILPRR76 pKa = 11.84CMDD79 pKa = 3.85ILPRR83 pKa = 11.84GMIILPRR90 pKa = 11.84GMNVLPNGIIILPKK104 pKa = 10.51NFIIRR109 pKa = 3.63

Molecular weight: 12.02 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4913

0

4913

1713457

14

6519

348.8

39.44

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.318 ± 0.033

0.994 ± 0.012

5.52 ± 0.033

6.566 ± 0.031

4.988 ± 0.032

6.666 ± 0.038

2.033 ± 0.019

7.37 ± 0.034

7.221 ± 0.038

9.347 ± 0.042

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.446 ± 0.018

5.583 ± 0.032

3.65 ± 0.017

3.602 ± 0.02

4.121 ± 0.026

6.342 ± 0.026

5.354 ± 0.038

6.445 ± 0.036

1.23 ± 0.015

4.162 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski