Halomonas arcis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas

Average proteome isoelectric point is 6.06

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3843 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1H0AQP0|A0A1H0AQP0_9GAMM Elongation factor Tu OS=Halomonas arcis OX=416873 GN=tuf PE=3 SV=1
MM1 pKa = 6.69QTLSLPRR8 pKa = 11.84TLISAAVASAFALVAVNASADD29 pKa = 3.5LSDD32 pKa = 4.96RR33 pKa = 11.84YY34 pKa = 10.77VDD36 pKa = 3.75NDD38 pKa = 3.65GDD40 pKa = 4.0LMADD44 pKa = 3.59VPSDD48 pKa = 3.26EE49 pKa = 5.06SEE51 pKa = 4.06WVDD54 pKa = 3.3PDD56 pKa = 4.01TLVFAYY62 pKa = 9.53TPVEE66 pKa = 4.43DD67 pKa = 3.79PAVYY71 pKa = 10.81ADD73 pKa = 3.38VWSDD77 pKa = 3.94FLDD80 pKa = 3.91HH81 pKa = 7.29LSDD84 pKa = 3.44ATGKK88 pKa = 9.43EE89 pKa = 4.18VQFFPVQSNAAQQEE103 pKa = 4.14ALRR106 pKa = 11.84AGRR109 pKa = 11.84LHH111 pKa = 6.08VAGFNTGGVPVAVNCGGFRR130 pKa = 11.84PFAMMAAEE138 pKa = 5.1DD139 pKa = 4.3GSFGYY144 pKa = 10.59EE145 pKa = 3.89MEE147 pKa = 5.14IITYY151 pKa = 8.53PGSGIEE157 pKa = 4.16SVEE160 pKa = 4.06DD161 pKa = 3.75LEE163 pKa = 5.04GSQLAFTSEE172 pKa = 4.03TSNSGFRR179 pKa = 11.84APSALLRR186 pKa = 11.84SEE188 pKa = 4.38YY189 pKa = 11.0GMEE192 pKa = 4.11AGEE195 pKa = 4.35DD196 pKa = 3.81FEE198 pKa = 4.97TAFSGSHH205 pKa = 6.62DD206 pKa = 3.71NSVLGVVNEE215 pKa = 4.61DD216 pKa = 3.5YY217 pKa = 10.73EE218 pKa = 4.3AAAIANSVARR228 pKa = 11.84RR229 pKa = 11.84MLARR233 pKa = 11.84GVVEE237 pKa = 4.09EE238 pKa = 4.16GDD240 pKa = 3.87YY241 pKa = 11.15EE242 pKa = 4.57VVYY245 pKa = 10.11TSQTFPTTAYY255 pKa = 10.47GLAHH259 pKa = 6.6NLDD262 pKa = 4.04PEE264 pKa = 4.32LAEE267 pKa = 5.5DD268 pKa = 3.5IQDD271 pKa = 3.89AFFSYY276 pKa = 10.36DD277 pKa = 3.06WEE279 pKa = 4.54GTALEE284 pKa = 4.51EE285 pKa = 4.03EE286 pKa = 4.67FANSGEE292 pKa = 4.1AQFIPITYY300 pKa = 8.74QEE302 pKa = 3.9NWEE305 pKa = 4.45VIRR308 pKa = 11.84TIADD312 pKa = 3.65ANGVTYY318 pKa = 10.74DD319 pKa = 3.98CDD321 pKa = 3.29

Molecular weight: 34.68 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1H0IX58|A0A1H0IX58_9GAMM NAD(P)-dependent dehydrogenase short-chain alcohol dehydrogenase family OS=Halomonas arcis OX=416873 GN=SAMN04487951_12235 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.42RR12 pKa = 11.84KK13 pKa = 9.04RR14 pKa = 11.84AHH16 pKa = 6.12GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.19NGRR28 pKa = 11.84AIIARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.93GRR39 pKa = 11.84KK40 pKa = 8.85RR41 pKa = 11.84LSAA44 pKa = 3.96

Molecular weight: 5.14 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3843

0

3843

1237372

39

8954

322.0

35.4

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.665 ± 0.041

0.928 ± 0.015

5.781 ± 0.053

6.188 ± 0.036

3.563 ± 0.028

7.723 ± 0.049

2.456 ± 0.023

5.056 ± 0.031

3.009 ± 0.031

11.259 ± 0.063

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.632 ± 0.023

3.017 ± 0.027

4.751 ± 0.031

4.366 ± 0.035

6.37 ± 0.042

5.897 ± 0.034

5.244 ± 0.028

7.136 ± 0.031

1.472 ± 0.017

2.487 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski