Corallococcus sp. H22C18031201

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus; unclassified Corallococcus

Average proteome isoelectric point is 6.82

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7103 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3A5GF63|A0A3A5GF63_9DELT OMP_b-brl domain-containing protein OS=Corallococcus sp. H22C18031201 OX=2249217 GN=DRW03_05290 PE=4 SV=1
MM1 pKa = 7.61RR2 pKa = 11.84RR3 pKa = 11.84PLRR6 pKa = 11.84FLGPFVALCLSACSLLVDD24 pKa = 5.23FDD26 pKa = 5.45PEE28 pKa = 4.28GQPCDD33 pKa = 4.24KK34 pKa = 10.68GQCLPGYY41 pKa = 9.32VCQNDD46 pKa = 3.38VCVPGEE52 pKa = 4.05SDD54 pKa = 3.4GGSDD58 pKa = 4.42SGLPPALDD66 pKa = 3.63AGKK69 pKa = 10.13DD70 pKa = 3.17AGTDD74 pKa = 3.1AGRR77 pKa = 11.84DD78 pKa = 3.67GGSDD82 pKa = 3.04AGG84 pKa = 3.9

Molecular weight: 8.49 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3A5FJ45|A0A3A5FJ45_9DELT Penicillin-binding protein OS=Corallococcus sp. H22C18031201 OX=2249217 GN=DRW03_30730 PE=4 SV=1
MM1 pKa = 7.15FRR3 pKa = 11.84RR4 pKa = 11.84MRR6 pKa = 11.84QMIRR10 pKa = 11.84GLSLALTCAMLALGAGASAHH30 pKa = 6.21PLPTRR35 pKa = 11.84EE36 pKa = 3.53GSIAVVIGRR45 pKa = 11.84SVAAPRR51 pKa = 11.84PSAVRR56 pKa = 11.84RR57 pKa = 11.84ATHH60 pKa = 6.52AAPLRR65 pKa = 11.84VRR67 pKa = 11.84ARR69 pKa = 11.84RR70 pKa = 11.84VQASRR75 pKa = 11.84PRR77 pKa = 11.84ARR79 pKa = 11.84WTATRR84 pKa = 11.84GTAPPRR90 pKa = 11.84RR91 pKa = 11.84LFLHH95 pKa = 6.52HH96 pKa = 7.09RR97 pKa = 11.84ALLHH101 pKa = 6.18

Molecular weight: 11.1 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7103

0

7103

2681737

29

14203

377.5

40.86

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.505 ± 0.044

0.922 ± 0.013

5.084 ± 0.021

6.228 ± 0.03

3.319 ± 0.016

8.629 ± 0.031

2.139 ± 0.015

2.791 ± 0.021

2.735 ± 0.029

11.138 ± 0.04

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.931 ± 0.013

2.039 ± 0.02

6.177 ± 0.028

3.351 ± 0.016

8.155 ± 0.037

5.742 ± 0.025

5.449 ± 0.031

8.29 ± 0.033

1.356 ± 0.011

2.019 ± 0.017
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski