Tanticharoenia sakaeratensis NBRC 103193

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Tanticharoenia; Tanticharoenia sakaeratensis

Average proteome isoelectric point is 6.61

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3154 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0D6MKM2|A0A0D6MKM2_9PROT Molybdopterin oxidoreductase OS=Tanticharoenia sakaeratensis NBRC 103193 OX=1231623 GN=Tasa_015_010 PE=3 SV=1
MM1 pKa = 7.36GMVKK5 pKa = 10.07DD6 pKa = 3.98RR7 pKa = 11.84SMSIFSSLDD16 pKa = 3.33TAVSGLNAQSQAFSNLSNNISNSQTVGYY44 pKa = 9.63KK45 pKa = 9.41ATDD48 pKa = 3.14TAFEE52 pKa = 4.49DD53 pKa = 4.73FVTNSASGNSGTLNDD68 pKa = 4.44GGGSYY73 pKa = 10.6SDD75 pKa = 3.75SVAANTIQRR84 pKa = 11.84NDD86 pKa = 3.32VQGTITSSTNALALAISGNGFFNVQEE112 pKa = 4.26ASGSSASSSPTFSGQQYY129 pKa = 6.37YY130 pKa = 8.66TRR132 pKa = 11.84NGDD135 pKa = 3.47FSRR138 pKa = 11.84DD139 pKa = 3.36ANGYY143 pKa = 9.05LVNTSGQYY151 pKa = 10.47LEE153 pKa = 5.39GYY155 pKa = 9.21QVGTNGQMGTTLQPLQIQNVAFTPTEE181 pKa = 4.19STTMTVSGTIGSSTTSGASTQTTATAYY208 pKa = 9.99SAQGTPQSVGLNWQQSTTNPLDD230 pKa = 3.36WTVSNSADD238 pKa = 3.72PTNSTAVTFNSDD250 pKa = 2.72GTLASVGSEE259 pKa = 4.07STSGATGSFSFTGSPQDD276 pKa = 3.25MTVNLGTIGQSSGIALSTTTTSTASDD302 pKa = 3.09ATMTTDD308 pKa = 3.1SVTSGTFQGLSMQSDD323 pKa = 4.47GSVMATFNNGLSQLVGKK340 pKa = 10.43IPLATFANPNGLAPADD356 pKa = 3.87GQAYY360 pKa = 6.7TATEE364 pKa = 3.84ASGGPTEE371 pKa = 4.36NAVNTGAAGSLEE383 pKa = 4.27TGSTEE388 pKa = 4.98SSTTDD393 pKa = 3.07LTGDD397 pKa = 4.11LTQLIVAQQAYY408 pKa = 8.69GANSKK413 pKa = 10.01VVSTADD419 pKa = 3.07QLMQTTIAMIQQ430 pKa = 3.01

Molecular weight: 43.52 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0D6MJU6|A0A0D6MJU6_9PROT Protoheme IX farnesyltransferase OS=Tanticharoenia sakaeratensis NBRC 103193 OX=1231623 GN=ctaB PE=3 SV=1
MM1 pKa = 7.58FFRR4 pKa = 11.84KK5 pKa = 9.67KK6 pKa = 9.88SAPPAPQPTVTPGNAKK22 pKa = 9.36PAAGRR27 pKa = 11.84HH28 pKa = 4.94IGGLTTINVGLTALASIGPRR48 pKa = 11.84RR49 pKa = 11.84FRR51 pKa = 11.84PHH53 pKa = 5.8AQAALAMIAAAQALWTLIRR72 pKa = 11.84KK73 pKa = 9.22SSS75 pKa = 3.12

Molecular weight: 7.83 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3154

0

3154

1028729

40

2868

326.2

35.22

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.061 ± 0.062

0.97 ± 0.013

5.953 ± 0.03

4.692 ± 0.04

3.406 ± 0.022

8.715 ± 0.038

2.504 ± 0.017

4.894 ± 0.028

2.102 ± 0.028

10.238 ± 0.05

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.516 ± 0.019

2.404 ± 0.033

5.693 ± 0.035

3.202 ± 0.025

7.661 ± 0.045

5.534 ± 0.036

5.694 ± 0.039

7.201 ± 0.036

1.418 ± 0.016

2.141 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski