Croceivirga radicis

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Croceivirga

Average proteome isoelectric point is 6.51

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3064 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1V6LPX4|A0A1V6LPX4_9FLAO SAM-dependent methyltransferase OS=Croceivirga radicis OX=1929488 GN=BUL40_12190 PE=4 SV=1
MM1 pKa = 7.14TKK3 pKa = 10.23FRR5 pKa = 11.84ICVIHH10 pKa = 6.99CIDD13 pKa = 3.62YY14 pKa = 10.87LRR16 pKa = 11.84RR17 pKa = 11.84TATFSYY23 pKa = 10.62LILAFVFSIQQLSAQTTFTEE43 pKa = 4.67SAASYY48 pKa = 10.19NLNIGQSKK56 pKa = 10.86DD57 pKa = 3.5GGHH60 pKa = 6.62AWADD64 pKa = 3.36FDD66 pKa = 6.27LDD68 pKa = 3.33GDD70 pKa = 3.83QDD72 pKa = 4.05VLVLVNSTSQKK83 pKa = 10.21ARR85 pKa = 11.84LMRR88 pKa = 11.84NNGDD92 pKa = 3.5GTFTNVQTTLAPGILNARR110 pKa = 11.84AEE112 pKa = 4.22RR113 pKa = 11.84QAAWGDD119 pKa = 3.68LNNDD123 pKa = 3.09GRR125 pKa = 11.84PDD127 pKa = 3.69FMITSSGNSGGNPSPPALQIFLQNLDD153 pKa = 3.69GTFGDD158 pKa = 4.68ALGGTNPITVGRR170 pKa = 11.84NGHH173 pKa = 6.55TITINPMNAEE183 pKa = 3.88GAGFFDD189 pKa = 5.29FEE191 pKa = 5.45GDD193 pKa = 3.18GDD195 pKa = 4.44LDD197 pKa = 4.12IFFDD201 pKa = 3.52SHH203 pKa = 7.59NYY205 pKa = 9.73GIEE208 pKa = 3.78ILRR211 pKa = 11.84NNYY214 pKa = 8.86IDD216 pKa = 3.84HH217 pKa = 6.74TNSTVTNPTAALLFSHH233 pKa = 6.64ITTGNGNGVVNFGLNQFATDD253 pKa = 3.59GDD255 pKa = 4.38YY256 pKa = 10.12GTAADD261 pKa = 4.69ANDD264 pKa = 5.01DD265 pKa = 3.6GWVDD269 pKa = 2.52IFMRR273 pKa = 11.84KK274 pKa = 8.61RR275 pKa = 11.84DD276 pKa = 3.74EE277 pKa = 4.48NDD279 pKa = 2.67FFLNQGGIFTNGSDD293 pKa = 4.22LAQAANGNKK302 pKa = 9.6GGNGLWDD309 pKa = 4.35LDD311 pKa = 3.81NDD313 pKa = 4.14GDD315 pKa = 5.06LDD317 pKa = 4.86AVWTEE322 pKa = 3.76NGLTQIYY329 pKa = 9.96RR330 pKa = 11.84NDD332 pKa = 3.5GSGIWTALGTGVFPGLPQPNNSNNGNSSNRR362 pKa = 11.84IDD364 pKa = 3.82ALAGGDD370 pKa = 3.72IDD372 pKa = 4.66NDD374 pKa = 3.56GDD376 pKa = 3.96IDD378 pKa = 3.8ILLVGQSRR386 pKa = 11.84SYY388 pKa = 11.44LYY390 pKa = 10.31INQLNSPTPAPGVIGSGSPMNFSLDD415 pKa = 3.34PEE417 pKa = 4.62TFNTNDD423 pKa = 3.64GEE425 pKa = 4.61GTTMVDD431 pKa = 3.05VDD433 pKa = 5.18DD434 pKa = 6.66DD435 pKa = 4.8GDD437 pKa = 4.09LDD439 pKa = 3.71IYY441 pKa = 11.01MNINGSGNQLWINNLAAANRR461 pKa = 11.84NNHH464 pKa = 5.71LMVNVIEE471 pKa = 5.01DD472 pKa = 3.62RR473 pKa = 11.84ASNGDD478 pKa = 3.16TGGFAGRR485 pKa = 11.84IALGTNVLIRR495 pKa = 11.84DD496 pKa = 3.73CSGNIVSGLRR506 pKa = 11.84QVNGVYY512 pKa = 10.51GHH514 pKa = 6.51GTQQPEE520 pKa = 4.33TVHH523 pKa = 6.64FGLPLGEE530 pKa = 4.15NEE532 pKa = 4.18TYY534 pKa = 10.13IIEE537 pKa = 4.04VRR539 pKa = 11.84YY540 pKa = 9.64PNFNDD545 pKa = 3.45PEE547 pKa = 4.11EE548 pKa = 5.28GITRR552 pKa = 11.84LIATGVAQPSTIAGTNHH569 pKa = 6.02YY570 pKa = 11.07NLTTTNAEE578 pKa = 4.32TIQNLNAPEE587 pKa = 5.24AEE589 pKa = 4.76DD590 pKa = 4.07DD591 pKa = 4.73LVTIPYY597 pKa = 9.09GNSVSIQINLFTNDD611 pKa = 3.92SEE613 pKa = 4.64PDD615 pKa = 3.43GEE617 pKa = 4.41NFFIEE622 pKa = 5.71SITQPTVGSVTIDD635 pKa = 3.35DD636 pKa = 4.53ANNGLVTYY644 pKa = 8.05TYY646 pKa = 11.3NNAAPFPGSTSFTYY660 pKa = 10.06TIVDD664 pKa = 3.42DD665 pKa = 4.54TYY667 pKa = 11.38NICAAQGKK675 pKa = 9.79SDD677 pKa = 3.6TATVTVYY684 pKa = 9.86EE685 pKa = 4.42PCSDD689 pKa = 3.58PTGVDD694 pKa = 3.01TDD696 pKa = 3.87GDD698 pKa = 4.69GINDD702 pKa = 3.23ICDD705 pKa = 3.47YY706 pKa = 11.71DD707 pKa = 4.59DD708 pKa = 5.9DD709 pKa = 5.38NDD711 pKa = 5.0GISDD715 pKa = 4.27FDD717 pKa = 3.83EE718 pKa = 4.56QQCSTTNPGVLGVPTTVLGGTAVDD742 pKa = 5.36EE743 pKa = 5.24IYY745 pKa = 10.77TDD747 pKa = 4.07YY748 pKa = 11.45NGYY751 pKa = 9.22WYY753 pKa = 10.87SSTASINSIEE763 pKa = 4.44PNLSHH768 pKa = 7.02NLLAFGSGGNLYY780 pKa = 9.14STGVVNTNMLDD791 pKa = 3.33TDD793 pKa = 4.0SNGRR797 pKa = 11.84YY798 pKa = 9.59DD799 pKa = 5.08AVDD802 pKa = 3.49TNGDD806 pKa = 2.98GSGNINITEE815 pKa = 4.16MEE817 pKa = 3.78WRR819 pKa = 11.84AFRR822 pKa = 11.84PNSNITNKK830 pKa = 9.75VALEE834 pKa = 3.97SALNDD839 pKa = 3.65GTLGSALGSTVIANLATDD857 pKa = 4.45PLNPLLTNGPRR868 pKa = 11.84GLDD871 pKa = 3.4LGTGIANVFDD881 pKa = 3.73SWFFNISTIDD891 pKa = 3.14IAAVNDD897 pKa = 4.21GLPDD901 pKa = 3.48ILITQVAQISSTVDD915 pKa = 2.84HH916 pKa = 6.96NIAFFDD922 pKa = 3.66AAGNPVGNQVRR933 pKa = 11.84VTSLGGGEE941 pKa = 4.13LSSVIGAQRR950 pKa = 11.84YY951 pKa = 8.4DD952 pKa = 3.35VYY954 pKa = 10.3QTNGSSWQVNVTKK967 pKa = 10.43NIRR970 pKa = 11.84MATLEE975 pKa = 4.04LSEE978 pKa = 5.04FGLDD982 pKa = 3.24ASNIGNVALMRR993 pKa = 11.84LTLNNSADD1001 pKa = 4.02TAFLAYY1007 pKa = 11.0NMDD1010 pKa = 3.83SFGEE1014 pKa = 4.3FCTDD1018 pKa = 4.17LDD1020 pKa = 3.97TDD1022 pKa = 3.65GDD1024 pKa = 4.59GIVDD1028 pKa = 4.55RR1029 pKa = 11.84LDD1031 pKa = 4.13LDD1033 pKa = 3.67SDD1035 pKa = 3.62NDD1037 pKa = 4.44GIYY1040 pKa = 10.89DD1041 pKa = 3.76VVEE1044 pKa = 4.41AGHH1047 pKa = 6.59NLTHH1051 pKa = 6.32TNGRR1055 pKa = 11.84LTGAVGADD1063 pKa = 4.07GIIDD1067 pKa = 4.09ALQTNPNNQTTTYY1080 pKa = 10.32IVADD1084 pKa = 4.0TNGDD1088 pKa = 4.14GIPDD1092 pKa = 4.45FKK1094 pKa = 11.52NLDD1097 pKa = 3.71SDD1099 pKa = 4.71GDD1101 pKa = 3.83GCTDD1105 pKa = 3.15VNEE1108 pKa = 5.32AGITDD1113 pKa = 3.95NNDD1116 pKa = 2.93DD1117 pKa = 4.73GYY1119 pKa = 11.52LGDD1122 pKa = 4.12IPLTVSLDD1130 pKa = 3.65GVVTSGADD1138 pKa = 3.6GYY1140 pKa = 6.54TTPVDD1145 pKa = 3.46ADD1147 pKa = 3.57GNGIYY1152 pKa = 10.19DD1153 pKa = 3.79YY1154 pKa = 10.27TEE1156 pKa = 3.82VGAAPTITDD1165 pKa = 3.34QPTNTTICPGCSGTITANFANADD1188 pKa = 3.71GYY1190 pKa = 10.44QWQLFNGSTWEE1201 pKa = 3.85NLVNGGLYY1209 pKa = 10.7GGTTTQTLTITNPTSAEE1226 pKa = 3.8HH1227 pKa = 6.34GNTYY1231 pKa = 10.3RR1232 pKa = 11.84IVGSSTTFVCRR1243 pKa = 11.84NAISNPVVLSVRR1255 pKa = 11.84INTVITNRR1263 pKa = 11.84RR1264 pKa = 11.84ITYY1267 pKa = 10.09RR1268 pKa = 11.84VDD1270 pKa = 3.17PKK1272 pKa = 11.36

Molecular weight: 135.2 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1V6LTL2|A0A1V6LTL2_9FLAO Bifunctional alpha alpha-trehalose-phosphate synthase (UDP-forming)/trehalose-phosphatase OS=Croceivirga radicis OX=1929488 GN=BUL40_06645 PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.59RR3 pKa = 11.84TFQPSKK9 pKa = 9.13RR10 pKa = 11.84KK11 pKa = 9.48RR12 pKa = 11.84RR13 pKa = 11.84NKK15 pKa = 9.49HH16 pKa = 3.94GFRR19 pKa = 11.84EE20 pKa = 4.19RR21 pKa = 11.84MATANGRR28 pKa = 11.84KK29 pKa = 8.93VLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.08GRR39 pKa = 11.84KK40 pKa = 8.3KK41 pKa = 9.83LTVSSEE47 pKa = 3.9PRR49 pKa = 11.84HH50 pKa = 5.77KK51 pKa = 10.61KK52 pKa = 9.84

Molecular weight: 6.26 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3064

0

3064

1106336

38

4776

361.1

40.55

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.085 ± 0.045

0.704 ± 0.017

5.619 ± 0.044

6.501 ± 0.041

5.073 ± 0.03

6.816 ± 0.052

1.75 ± 0.024

7.09 ± 0.041

7.355 ± 0.073

9.654 ± 0.054

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.132 ± 0.022

6.051 ± 0.04

3.604 ± 0.029

3.582 ± 0.025

3.398 ± 0.028

5.868 ± 0.031

6.093 ± 0.064

6.422 ± 0.033

1.138 ± 0.016

4.066 ± 0.031
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski