African oil palm ringspot virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Betaflexiviridae; Quinvirinae; Robigovirus

Average proteome isoelectric point is 7.29

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|C1BEG0|C1BEG0_9VIRU Movement protein TGB2 OS=African oil palm ringspot virus OX=185218 PE=3 SV=1
MM1 pKa = 7.69EE2 pKa = 4.65EE3 pKa = 3.91VCEE6 pKa = 4.22KK7 pKa = 10.69LLEE10 pKa = 4.32LGYY13 pKa = 10.34IRR15 pKa = 11.84VEE17 pKa = 4.34SVSISYY23 pKa = 9.17PIVVHH28 pKa = 6.41GVPGCGKK35 pKa = 10.42SFICKK40 pKa = 9.58EE41 pKa = 3.83LAKK44 pKa = 10.61DD45 pKa = 3.6PKK47 pKa = 10.8FKK49 pKa = 10.71VQSFGVIPAGSLCGAVIHH67 pKa = 6.64KK68 pKa = 10.5ALTEE72 pKa = 3.89PSGDD76 pKa = 3.44FNVLDD81 pKa = 4.7EE82 pKa = 4.34YY83 pKa = 11.64LGGKK87 pKa = 9.44DD88 pKa = 3.67FNLEE92 pKa = 3.84RR93 pKa = 11.84FDD95 pKa = 5.66LVLSDD100 pKa = 4.87PYY102 pKa = 11.32QSFKK106 pKa = 10.88KK107 pKa = 10.16PEE109 pKa = 4.04RR110 pKa = 11.84AHH112 pKa = 5.27FTSNITRR119 pKa = 11.84RR120 pKa = 11.84FGSQVCCLLNKK131 pKa = 10.28LGFDD135 pKa = 4.66IIPHH139 pKa = 6.6PSLPAEE145 pKa = 3.84QTLLIEE151 pKa = 4.63GSLFKK156 pKa = 10.8TEE158 pKa = 3.95LRR160 pKa = 11.84GIIITFEE167 pKa = 3.83PAVAEE172 pKa = 4.74LIRR175 pKa = 11.84AHH177 pKa = 6.21GLEE180 pKa = 4.62PKK182 pKa = 10.1HH183 pKa = 6.14PCDD186 pKa = 3.3VRR188 pKa = 11.84GAEE191 pKa = 4.04FEE193 pKa = 4.56VVTFCTAHH201 pKa = 7.3ADD203 pKa = 3.56LQEE206 pKa = 4.3IVSPEE211 pKa = 4.04LYY213 pKa = 10.13ISLTRR218 pKa = 11.84ATKK221 pKa = 9.32EE222 pKa = 4.17LRR224 pKa = 11.84VLTNKK229 pKa = 9.74FDD231 pKa = 3.67EE232 pKa = 4.62SS233 pKa = 3.67

Molecular weight: 25.88 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|C1BEG1|C1BEG1_9VIRU Movement protein TGBp3 OS=African oil palm ringspot virus OX=185218 PE=3 SV=1
MM1 pKa = 7.62SLRR4 pKa = 11.84PPTNYY9 pKa = 9.95TNAILAASIGVAVGLLIHH27 pKa = 6.11FVRR30 pKa = 11.84RR31 pKa = 11.84NEE33 pKa = 4.23LPHH36 pKa = 7.97SGDD39 pKa = 4.15NIHH42 pKa = 6.65HH43 pKa = 6.96LPYY46 pKa = 10.24GGQYY50 pKa = 9.59MDD52 pKa = 3.25GTKK55 pKa = 10.36CINYY59 pKa = 8.94NRR61 pKa = 11.84GFGGRR66 pKa = 11.84NFSLLGTSSNSGIWLLLLTTGLLLYY91 pKa = 7.51VTRR94 pKa = 11.84SCFARR99 pKa = 11.84GGYY102 pKa = 9.26IYY104 pKa = 10.45HH105 pKa = 6.52SNCHH109 pKa = 4.4IHH111 pKa = 5.89RR112 pKa = 11.84TVV114 pKa = 2.64

Molecular weight: 12.59 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

2528

69

1847

505.6

56.78

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.278 ± 0.987

2.492 ± 0.211

5.182 ± 1.029

6.646 ± 0.734

6.013 ± 0.696

5.538 ± 1.185

2.255 ± 0.633

5.815 ± 0.443

6.843 ± 1.036

9.296 ± 1.143

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.978 ± 0.399

4.074 ± 0.579

4.47 ± 0.358

2.769 ± 0.454

5.617 ± 0.262

9.059 ± 0.68

4.707 ± 1.215

6.092 ± 0.789

0.91 ± 0.246

2.888 ± 0.504
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski