Roseivivax lentus

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Roseivivax

Average proteome isoelectric point is 6.08

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4153 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1N7P730|A0A1N7P730_9RHOB Initiator Replication protein OS=Roseivivax lentus OX=633194 GN=SAMN05421759_11341 PE=4 SV=1
MM1 pKa = 7.59ISVTTRR7 pKa = 11.84AQLEE11 pKa = 4.14NALASAQAGDD21 pKa = 4.64EE22 pKa = 4.21IVLAAGDD29 pKa = 3.82YY30 pKa = 11.36GSFDD34 pKa = 4.04FNGYY38 pKa = 9.77NYY40 pKa = 10.44SGYY43 pKa = 8.76VTVRR47 pKa = 11.84SADD50 pKa = 3.49PDD52 pKa = 3.57NPAVFDD58 pKa = 3.88QIDD61 pKa = 3.49IVGSSFLAIDD71 pKa = 3.92SVHH74 pKa = 6.58VDD76 pKa = 3.29NPSNGAASSKK86 pKa = 10.15VVNIDD91 pKa = 3.56GNSHH95 pKa = 7.43DD96 pKa = 3.85IVFSNSEE103 pKa = 4.09VNGSVTTSTNYY114 pKa = 10.49NEE116 pKa = 4.36FQGHH120 pKa = 4.8YY121 pKa = 10.51GIYY124 pKa = 9.64TGGNVRR130 pKa = 11.84NIRR133 pKa = 11.84IEE135 pKa = 4.01EE136 pKa = 4.2NEE138 pKa = 3.92VHH140 pKa = 6.74DD141 pKa = 4.31VKK143 pKa = 11.34NGFVALGSDD152 pKa = 3.76NIEE155 pKa = 3.89VVGNHH160 pKa = 6.51FDD162 pKa = 3.83RR163 pKa = 11.84LGNDD167 pKa = 3.09TMKK170 pKa = 10.56FAGVNGVLIEE180 pKa = 4.16NNIGPTSNFPSPTAHH195 pKa = 6.39VDD197 pKa = 4.61FIQFQGSSEE206 pKa = 4.3NITIRR211 pKa = 11.84GNVSLAGNIGTTQAIFMADD230 pKa = 2.88GSYY233 pKa = 11.29NNVLIEE239 pKa = 4.13QNILYY244 pKa = 9.45TGMLHH249 pKa = 7.96GITLYY254 pKa = 10.83SGANVTIRR262 pKa = 11.84DD263 pKa = 3.94NTVLNAPDD271 pKa = 4.37LVHH274 pKa = 6.97KK275 pKa = 9.77ATVIQSPDD283 pKa = 3.09GATVTGNIISATGYY297 pKa = 9.99DD298 pKa = 3.75GKK300 pKa = 11.42VSGGNLYY307 pKa = 9.69VQHH310 pKa = 6.82DD311 pKa = 4.25QPNQAHH317 pKa = 6.86HH318 pKa = 6.35YY319 pKa = 10.64SDD321 pKa = 4.15YY322 pKa = 10.88FPNAEE327 pKa = 4.11TGLGVTLQDD336 pKa = 4.12LVPLAGSLAEE346 pKa = 3.99QYY348 pKa = 10.58GAYY351 pKa = 8.96EE352 pKa = 4.04RR353 pKa = 11.84LMEE356 pKa = 5.02LLNGDD361 pKa = 3.5TWVPEE366 pKa = 4.29PAPQPDD372 pKa = 5.01PDD374 pKa = 4.52PQPEE378 pKa = 4.68PDD380 pKa = 4.23PQPLPDD386 pKa = 5.06LDD388 pKa = 4.05PAEE391 pKa = 4.33GTVFSLPGEE400 pKa = 4.12LTIADD405 pKa = 3.9AGDD408 pKa = 3.95VFEE411 pKa = 4.87MAHH414 pKa = 5.55SAEE417 pKa = 4.62LEE419 pKa = 4.09ISSGTVAFSFTADD432 pKa = 3.53DD433 pKa = 3.78VAGVQGLVAKK443 pKa = 10.14DD444 pKa = 3.1ASGYY448 pKa = 10.24VGGGHH453 pKa = 6.98HH454 pKa = 6.67FAAYY458 pKa = 10.61LEE460 pKa = 4.99GNTLMVRR467 pKa = 11.84LQDD470 pKa = 3.93AASDD474 pKa = 4.2AYY476 pKa = 11.13LSLDD480 pKa = 3.95GIEE483 pKa = 5.43AGTTYY488 pKa = 11.07DD489 pKa = 3.29VAVTFGPDD497 pKa = 3.84GGEE500 pKa = 3.45LWVNGEE506 pKa = 4.19QVSTTEE512 pKa = 5.77LVMDD516 pKa = 4.07WTQNQQHH523 pKa = 5.91LQWGGLGWGSADD535 pKa = 3.39QAAGYY540 pKa = 8.54DD541 pKa = 3.47ANFRR545 pKa = 11.84GTISDD550 pKa = 3.32ATIYY554 pKa = 8.08DD555 pKa = 3.86TKK557 pKa = 10.45LTTGGVTTQTGTEE570 pKa = 4.01FADD573 pKa = 4.09LLVGDD578 pKa = 5.24DD579 pKa = 4.02FANRR583 pKa = 11.84LQGLNGNDD591 pKa = 3.4TLNGNGGDD599 pKa = 4.05DD600 pKa = 4.18FLDD603 pKa = 4.32GGAGTDD609 pKa = 3.41RR610 pKa = 11.84VSGGAGNDD618 pKa = 3.81DD619 pKa = 4.36LDD621 pKa = 3.85VGAGNGSFQYY631 pKa = 11.39ADD633 pKa = 3.25GGAGNDD639 pKa = 3.49TYY641 pKa = 11.14HH642 pKa = 6.09YY643 pKa = 10.63AKK645 pKa = 10.67DD646 pKa = 3.26AGRR649 pKa = 11.84LYY651 pKa = 11.08LSGEE655 pKa = 4.32TASSGSADD663 pKa = 3.76RR664 pKa = 11.84IVFSDD669 pKa = 3.86LTLDD673 pKa = 4.72DD674 pKa = 4.29FTFDD678 pKa = 3.43TLDD681 pKa = 3.94YY682 pKa = 11.33GPLPYY687 pKa = 10.86GGDD690 pKa = 3.43QVALRR695 pKa = 11.84MLWNDD700 pKa = 3.67GEE702 pKa = 4.61SSGEE706 pKa = 3.72LRR708 pKa = 11.84VAA710 pKa = 4.02

Molecular weight: 74.73 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1N7M9Q7|A0A1N7M9Q7_9RHOB L-glutamine ABC transporter membrane protein /L-glutamate ABC transporter membrane protein /L-aspartate ABC transporter membrane protein /L-asparagine ABC transporter membrane protein OS=Roseivivax lentus OX=633194 GN=SAMN05421759_104115 PE=3 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.01RR4 pKa = 11.84TFQPSNLVRR13 pKa = 11.84KK14 pKa = 9.18RR15 pKa = 11.84RR16 pKa = 11.84HH17 pKa = 4.42GFRR20 pKa = 11.84ARR22 pKa = 11.84MATKK26 pKa = 10.37AGRR29 pKa = 11.84KK30 pKa = 8.54ILNARR35 pKa = 11.84RR36 pKa = 11.84ARR38 pKa = 11.84GRR40 pKa = 11.84KK41 pKa = 9.07SLSAA45 pKa = 3.93

Molecular weight: 5.22 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4153

0

4153

1304865

24

2538

314.2

34.01

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.141 ± 0.063

0.869 ± 0.013

6.212 ± 0.034

6.045 ± 0.038

3.71 ± 0.025

8.802 ± 0.042

2.017 ± 0.017

5.005 ± 0.03

2.755 ± 0.027

10.046 ± 0.041

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.675 ± 0.022

2.34 ± 0.02

5.31 ± 0.028

2.93 ± 0.019

7.126 ± 0.043

4.934 ± 0.026

5.433 ± 0.029

7.079 ± 0.029

1.417 ± 0.017

2.155 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski