Abditibacterium utsteinense

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Abditibacteriota; Abditibacteria; Abditibacteriales; Abitibacteriaceae; Abditibacterium

Average proteome isoelectric point is 6.84

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3182 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2S8SRM1|A0A2S8SRM1_9BACT Phosphate transport system permease protein OS=Abditibacterium utsteinense OX=1960156 GN=B1R32_11292 PE=3 SV=1
MM1 pKa = 7.82INITDD6 pKa = 3.54TAAAKK11 pKa = 10.33VHH13 pKa = 6.25GLLQAQEE20 pKa = 4.7KK21 pKa = 8.38PNAMLRR27 pKa = 11.84VFVSGGGCSGYY38 pKa = 10.57SYY40 pKa = 11.61GMTLEE45 pKa = 4.15EE46 pKa = 4.92DD47 pKa = 3.62AMEE50 pKa = 5.07GDD52 pKa = 3.62QQFSVNGVGVIIDD65 pKa = 3.88PRR67 pKa = 11.84SAQYY71 pKa = 11.19LEE73 pKa = 4.22GANIDD78 pKa = 3.97FVDD81 pKa = 3.31NMMGGGFKK89 pKa = 9.71IDD91 pKa = 3.75NPNAASSCGCGSSFTPKK108 pKa = 9.92EE109 pKa = 3.98GQAEE113 pKa = 4.39GEE115 pKa = 4.07EE116 pKa = 4.38AMAGAAAGGGCGSCSSGGGFF136 pKa = 4.34

Molecular weight: 13.66 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2S8SSX1|A0A2S8SSX1_9BACT Endonuclease Uma2 family (Restriction endonuclease fold) OS=Abditibacterium utsteinense OX=1960156 GN=B1R32_10883 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.47RR3 pKa = 11.84TWQPKK8 pKa = 8.03KK9 pKa = 10.1RR10 pKa = 11.84PRR12 pKa = 11.84ARR14 pKa = 11.84KK15 pKa = 8.61LGFRR19 pKa = 11.84ARR21 pKa = 11.84MSSHH25 pKa = 6.67GGRR28 pKa = 11.84AIISRR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.67GRR39 pKa = 11.84IKK41 pKa = 9.98LTQVV45 pKa = 2.62

Molecular weight: 5.33 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3182

0

3182

1065418

25

3129

334.8

36.65

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.094 ± 0.052

0.936 ± 0.015

4.954 ± 0.029

6.031 ± 0.047

4.325 ± 0.029

7.909 ± 0.035

1.874 ± 0.022

5.233 ± 0.031

4.309 ± 0.034

10.234 ± 0.054

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.038 ± 0.022

3.626 ± 0.026

5.136 ± 0.035

3.931 ± 0.025

6.411 ± 0.04

6.472 ± 0.035

5.211 ± 0.038

6.635 ± 0.037

1.458 ± 0.023

2.183 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski