Bacteroidetes oral taxon 274 str. F0058

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; unclassified Bacteroidetes; Bacteroidetes oral taxon 274

Average proteome isoelectric point is 6.76

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1854 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|D7JE57|D7JE57_9BACT Stage 0 sporulation protein YaaT OS=Bacteroidetes oral taxon 274 str. F0058 OX=575590 GN=HMPREF0156_00765 PE=4 SV=1
MM1 pKa = 7.19YY2 pKa = 7.77WTLEE6 pKa = 4.11LASKK10 pKa = 11.0LEE12 pKa = 4.24DD13 pKa = 4.06APWPATKK20 pKa = 10.54DD21 pKa = 3.54EE22 pKa = 5.18LIDD25 pKa = 3.42YY26 pKa = 10.58AMRR29 pKa = 11.84TGAPLEE35 pKa = 4.37VIEE38 pKa = 4.31NLQGIEE44 pKa = 4.51DD45 pKa = 3.99EE46 pKa = 4.7GDD48 pKa = 3.43VYY50 pKa = 11.85DD51 pKa = 5.05NIEE54 pKa = 5.34DD55 pKa = 3.31IWPDD59 pKa = 3.62YY60 pKa = 10.2PSKK63 pKa = 11.18EE64 pKa = 3.66DD65 pKa = 3.46FFFNEE70 pKa = 4.55DD71 pKa = 3.13EE72 pKa = 4.46YY73 pKa = 11.99

Molecular weight: 8.61 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|D7JFV9|D7JFV9_9BACT Sporulation protein SpoIID-related protein OS=Bacteroidetes oral taxon 274 str. F0058 OX=575590 GN=HMPREF0156_01789 PE=4 SV=1
MM1 pKa = 7.5AKK3 pKa = 10.25EE4 pKa = 3.96SMKK7 pKa = 10.66ARR9 pKa = 11.84EE10 pKa = 4.12VKK12 pKa = 9.96RR13 pKa = 11.84AKK15 pKa = 10.25LVARR19 pKa = 11.84YY20 pKa = 9.45AEE22 pKa = 4.41KK23 pKa = 10.04RR24 pKa = 11.84KK25 pKa = 10.3QMIAEE30 pKa = 4.38GDD32 pKa = 3.49YY33 pKa = 11.41DD34 pKa = 4.36ALQTLPRR41 pKa = 11.84NSSYY45 pKa = 10.67IRR47 pKa = 11.84LHH49 pKa = 5.99NRR51 pKa = 11.84CKK53 pKa = 8.78MTGRR57 pKa = 11.84PKK59 pKa = 10.81GYY61 pKa = 8.37MRR63 pKa = 11.84QFGISRR69 pKa = 11.84IQFRR73 pKa = 11.84EE74 pKa = 3.94MASKK78 pKa = 11.0GLIPGVKK85 pKa = 9.19KK86 pKa = 10.96ASWW89 pKa = 3.03

Molecular weight: 10.35 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1854

0

1854

603910

38

2484

325.7

36.76

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.917 ± 0.052

1.183 ± 0.025

5.824 ± 0.038

6.079 ± 0.059

4.769 ± 0.045

6.427 ± 0.049

1.692 ± 0.024

8.001 ± 0.061

7.196 ± 0.054

8.727 ± 0.058

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.465 ± 0.023

5.513 ± 0.051

3.354 ± 0.027

3.199 ± 0.033

4.68 ± 0.043

6.335 ± 0.047

5.657 ± 0.045

6.648 ± 0.043

0.967 ± 0.019

4.364 ± 0.051
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski