Gordonia phage Yago84

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Sourvirus; unclassified Sourvirus

Average proteome isoelectric point is 5.85

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 83 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4Y6EHX6|A0A4Y6EHX6_9CAUD Uncharacterized protein OS=Gordonia phage Yago84 OX=2571254 GN=57 PE=4 SV=1
MM1 pKa = 7.2SQTTVTTEE9 pKa = 3.64QLEE12 pKa = 4.43QIAEE16 pKa = 4.56LIDD19 pKa = 4.02AEE21 pKa = 4.44LGEE24 pKa = 5.6DD25 pKa = 3.82IRR27 pKa = 11.84PDD29 pKa = 3.2YY30 pKa = 10.79SGRR33 pKa = 11.84FMYY36 pKa = 10.33GRR38 pKa = 11.84SCVGYY43 pKa = 10.48VGAEE47 pKa = 3.87CSQFALLLAAATCGYY62 pKa = 10.24EE63 pKa = 4.18LDD65 pKa = 3.77AKK67 pKa = 11.07VSIEE71 pKa = 3.87ALLWAIGDD79 pKa = 3.94LGEE82 pKa = 4.93PSTDD86 pKa = 2.82SMGRR90 pKa = 11.84DD91 pKa = 3.44TIFYY95 pKa = 8.74WRR97 pKa = 11.84DD98 pKa = 3.08VRR100 pKa = 11.84VDD102 pKa = 3.63DD103 pKa = 6.15AEE105 pKa = 4.22DD106 pKa = 3.06

Molecular weight: 11.7 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4Y6EQ25|A0A4Y6EQ25_9CAUD Uncharacterized protein OS=Gordonia phage Yago84 OX=2571254 GN=58 PE=4 SV=1
MM1 pKa = 6.92TTTEE5 pKa = 4.2PVSKK9 pKa = 10.66YY10 pKa = 10.1GAYY13 pKa = 10.05DD14 pKa = 3.17VEE16 pKa = 4.38RR17 pKa = 11.84AQRR20 pKa = 11.84VAEE23 pKa = 4.06LTRR26 pKa = 11.84AGLSARR32 pKa = 11.84EE33 pKa = 3.41IAARR37 pKa = 11.84LRR39 pKa = 11.84VTVRR43 pKa = 11.84TVGRR47 pKa = 11.84DD48 pKa = 3.11RR49 pKa = 11.84RR50 pKa = 11.84RR51 pKa = 11.84TGTNGHH57 pKa = 6.45RR58 pKa = 11.84PARR61 pKa = 11.84WSEE64 pKa = 3.95EE65 pKa = 3.43KK66 pKa = 10.52LARR69 pKa = 11.84AKK71 pKa = 10.85ALLDD75 pKa = 4.19DD76 pKa = 4.37GASYY80 pKa = 11.13RR81 pKa = 11.84EE82 pKa = 3.73TAMTVGCDD90 pKa = 3.29PTHH93 pKa = 6.55LRR95 pKa = 11.84RR96 pKa = 11.84RR97 pKa = 11.84FPGYY101 pKa = 9.94GWPPGHH107 pKa = 6.71WPEE110 pKa = 4.34GLNPQIIAAARR121 pKa = 11.84RR122 pKa = 11.84EE123 pKa = 4.16KK124 pKa = 10.98

Molecular weight: 13.95 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

83

0

83

19346

45

1828

233.1

25.16

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.437 ± 0.252

0.92 ± 0.146

6.963 ± 0.281

5.96 ± 0.273

2.383 ± 0.157

8.73 ± 0.419

1.897 ± 0.193

4.352 ± 0.249

2.254 ± 0.163

8.203 ± 0.229

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.445 ± 0.109

2.698 ± 0.191

5.707 ± 0.267

3.453 ± 0.22

7.056 ± 0.373

5.619 ± 0.208

6.926 ± 0.213

7.836 ± 0.192

2.021 ± 0.096

2.14 ± 0.182
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski