Helicobacter canis NCTC 12740

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter canis

Average proteome isoelectric point is 6.75

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1800 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|V8CES6|V8CES6_9HELI Uncharacterized protein OS=Helicobacter canis NCTC 12740 OX=1357399 GN=HMPREF2087_01415 PE=4 SV=1
MM1 pKa = 7.52AVLHH5 pKa = 6.94DD6 pKa = 3.87VLNNSDD12 pKa = 4.41YY13 pKa = 11.05MLDD16 pKa = 3.6LCADD20 pKa = 3.75KK21 pKa = 10.96SLTMADD27 pKa = 4.25LDD29 pKa = 3.95SSSVFICRR37 pKa = 11.84CC38 pKa = 3.23

Molecular weight: 4.21 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|V8CIC0|V8CIC0_9HELI Single-stranded-DNA-specific exonuclease RecJ OS=Helicobacter canis NCTC 12740 OX=1357399 GN=HMPREF2087_00061 PE=3 SV=1
MM1 pKa = 8.13DD2 pKa = 4.43SRR4 pKa = 11.84VLTMDD9 pKa = 3.2YY10 pKa = 8.63HH11 pKa = 6.11TLQSKK16 pKa = 9.85ARR18 pKa = 11.84NDD20 pKa = 3.4DD21 pKa = 3.65TNADD25 pKa = 3.31SSMRR29 pKa = 11.84WILAPSFPAHH39 pKa = 6.95APRR42 pKa = 11.84ISPHH46 pKa = 5.04YY47 pKa = 8.8LKK49 pKa = 10.82HH50 pKa = 5.87SATLRR55 pKa = 11.84YY56 pKa = 8.88QALLALQRR64 pKa = 11.84TKK66 pKa = 10.48PCHH69 pKa = 5.1HH70 pKa = 6.5TQANTAHH77 pKa = 7.35KK78 pKa = 9.18PQNLPPKK85 pKa = 8.49HH86 pKa = 5.92RR87 pKa = 11.84HH88 pKa = 5.86IITLGIGANLGTRR101 pKa = 11.84QEE103 pKa = 3.71ICKK106 pKa = 10.23RR107 pKa = 11.84FAHH110 pKa = 6.53LLDD113 pKa = 4.14SLTSKK118 pKa = 11.01DD119 pKa = 3.57FTLLATSPILHH130 pKa = 6.53NPPFGYY136 pKa = 9.39TNQPYY141 pKa = 9.81FYY143 pKa = 10.14NATITLATSLSVVEE157 pKa = 3.94LFARR161 pKa = 11.84VFYY164 pKa = 10.57LEE166 pKa = 3.98RR167 pKa = 11.84RR168 pKa = 11.84FGRR171 pKa = 11.84GRR173 pKa = 11.84KK174 pKa = 8.84RR175 pKa = 11.84AFKK178 pKa = 10.15NAPRR182 pKa = 11.84TLDD185 pKa = 3.06IDD187 pKa = 3.61IIFYY191 pKa = 10.95DD192 pKa = 3.44KK193 pKa = 11.21VIIKK197 pKa = 10.1RR198 pKa = 11.84PYY200 pKa = 8.8LTIPHH205 pKa = 6.57HH206 pKa = 6.03GFRR209 pKa = 11.84TRR211 pKa = 11.84DD212 pKa = 3.49SVLLPLGFMLKK223 pKa = 9.89QVLEE227 pKa = 4.53SKK229 pKa = 10.53SIHH232 pKa = 5.65QSTRR236 pKa = 11.84SKK238 pKa = 10.28PCRR241 pKa = 11.84PLLSQEE247 pKa = 4.33KK248 pKa = 9.67LQQKK252 pKa = 8.89HH253 pKa = 4.35SKK255 pKa = 9.07RR256 pKa = 11.84RR257 pKa = 11.84AMSS260 pKa = 3.28

Molecular weight: 29.93 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1800

0

1800

596658

29

2885

331.5

36.94

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.754 ± 0.056

1.381 ± 0.025

5.092 ± 0.037

5.991 ± 0.061

4.744 ± 0.046

6.191 ± 0.056

2.146 ± 0.028

7.438 ± 0.05

6.641 ± 0.063

10.781 ± 0.068

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.111 ± 0.027

4.047 ± 0.041

3.645 ± 0.037

4.247 ± 0.039

4.293 ± 0.035

7.845 ± 0.055

4.654 ± 0.036

5.537 ± 0.052

0.789 ± 0.017

3.67 ± 0.037
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski