Staphylococcus phage phiIPLA-C1C

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Herelleviridae; Twortvirinae; Sepunavirus; Staphylococcus virus IPLAC1C

Average proteome isoelectric point is 6.16

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 203 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0D3MVS9|A0A0D3MVS9_9CAUD NTP pyrophosphohydrolase OS=Staphylococcus phage phiIPLA-C1C OX=1572704 PE=4 SV=1
MM1 pKa = 7.39TIKK4 pKa = 10.5EE5 pKa = 3.88FLQRR9 pKa = 11.84QEE11 pKa = 3.75EE12 pKa = 4.65STVKK16 pKa = 10.56DD17 pKa = 3.4VANYY21 pKa = 9.14GVQSGAIGEE30 pKa = 4.67LIYY33 pKa = 10.93TKK35 pKa = 10.71DD36 pKa = 3.28VVKK39 pKa = 10.75FFDD42 pKa = 4.19NYY44 pKa = 10.21RR45 pKa = 11.84QDD47 pKa = 3.1IEE49 pKa = 4.72TVVIDD54 pKa = 3.69YY55 pKa = 10.74LEE57 pKa = 4.32SVTGVKK63 pKa = 10.15YY64 pKa = 10.78FNLLNYY70 pKa = 10.36EE71 pKa = 4.17LMNDD75 pKa = 3.86LEE77 pKa = 4.62NYY79 pKa = 10.06VNVEE83 pKa = 4.08FQHH86 pKa = 6.36EE87 pKa = 4.04DD88 pKa = 3.15TYY90 pKa = 11.48IEE92 pKa = 4.02MEE94 pKa = 4.07YY95 pKa = 10.87QKK97 pKa = 11.07AEE99 pKa = 4.18EE100 pKa = 3.89IARR103 pKa = 11.84RR104 pKa = 11.84DD105 pKa = 3.31IEE107 pKa = 4.24NFEE110 pKa = 5.34DD111 pKa = 3.66MTEE114 pKa = 4.13DD115 pKa = 3.7EE116 pKa = 4.18QDD118 pKa = 3.39EE119 pKa = 5.27AITEE123 pKa = 4.09CLDD126 pKa = 4.11LVEE129 pKa = 6.3LDD131 pKa = 4.54LQDD134 pKa = 3.32TDD136 pKa = 3.94KK137 pKa = 11.62VQFVNLAVEE146 pKa = 4.99IVAQDD151 pKa = 3.46MTEE154 pKa = 3.87EE155 pKa = 4.36IYY157 pKa = 11.13

Molecular weight: 18.53 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0D3MV55|A0A0D3MV55_9CAUD Tail protein OS=Staphylococcus phage phiIPLA-C1C OX=1572704 PE=4 SV=1
MM1 pKa = 7.65TNRR4 pKa = 11.84KK5 pKa = 9.77SIGKK9 pKa = 8.35MSKK12 pKa = 8.33TRR14 pKa = 11.84ATWHH18 pKa = 6.11IKK20 pKa = 10.2PYY22 pKa = 9.06TQVKK26 pKa = 9.45KK27 pKa = 10.87DD28 pKa = 3.22KK29 pKa = 10.4TKK31 pKa = 8.33YY32 pKa = 6.98TRR34 pKa = 11.84KK35 pKa = 9.59RR36 pKa = 11.84KK37 pKa = 8.97HH38 pKa = 6.33KK39 pKa = 10.71KK40 pKa = 9.36RR41 pKa = 11.84DD42 pKa = 3.47DD43 pKa = 3.65YY44 pKa = 12.12

Molecular weight: 5.47 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

203

0

203

40989

43

1151

201.9

23.32

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.655 ± 0.204

0.581 ± 0.047

6.814 ± 0.138

8.222 ± 0.248

4.05 ± 0.137

5.321 ± 0.299

1.583 ± 0.083

7.841 ± 0.208

10.086 ± 0.235

8.173 ± 0.181

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.174 ± 0.096

7.387 ± 0.192

2.525 ± 0.118

3.289 ± 0.191

3.625 ± 0.112

6.392 ± 0.166

5.921 ± 0.17

6.241 ± 0.165

0.803 ± 0.066

5.319 ± 0.182
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski