Allisonella histaminiformans

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Negativicutes; Veillonellales; Veillonellaceae; Allisonella

Average proteome isoelectric point is 6.55

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1536 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1G5VYP5|A0A1G5VYP5_9FIRM Predicted arabinose efflux permease MFS family OS=Allisonella histaminiformans OX=209880 GN=SAMN02910343_01005 PE=4 SV=1
MM1 pKa = 7.43SFIMLVPFLGLLVIIVIWDD20 pKa = 3.52KK21 pKa = 11.53LEE23 pKa = 4.86SIPSVRR29 pKa = 11.84KK30 pKa = 9.52GKK32 pKa = 10.01HH33 pKa = 5.24SLWFPPPTPGSQFPVSTTAKK53 pKa = 9.45EE54 pKa = 4.16ISNHH58 pKa = 5.41SSPPEE63 pKa = 3.68PLFSVSDD70 pKa = 3.77KK71 pKa = 10.98QPLIRR76 pKa = 11.84IHH78 pKa = 6.26SVHH81 pKa = 6.85PSHH84 pKa = 7.33RR85 pKa = 11.84YY86 pKa = 8.43HH87 pKa = 6.58GHH89 pKa = 5.65VGCDD93 pKa = 2.96TDD95 pKa = 6.22DD96 pKa = 3.95EE97 pKa = 4.87NEE99 pKa = 4.23HH100 pKa = 6.27NTTQDD105 pKa = 3.3YY106 pKa = 10.82EE107 pKa = 4.41YY108 pKa = 10.96DD109 pKa = 4.4DD110 pKa = 4.27YY111 pKa = 12.02DD112 pKa = 4.46SYY114 pKa = 12.09DD115 pKa = 3.54GYY117 pKa = 11.49SYY119 pKa = 10.87IWGYY123 pKa = 11.68DD124 pKa = 2.96NGFADD129 pKa = 4.34GTDD132 pKa = 3.22SAEE135 pKa = 4.09RR136 pKa = 11.84DD137 pKa = 3.3IEE139 pKa = 4.01EE140 pKa = 4.15ARR142 pKa = 11.84QFGYY146 pKa = 10.55EE147 pKa = 3.89QGFEE151 pKa = 4.41DD152 pKa = 4.96GNASAYY158 pKa = 10.71DD159 pKa = 3.89DD160 pKa = 5.63DD161 pKa = 7.61DD162 pKa = 6.25YY163 pKa = 12.11DD164 pKa = 6.4DD165 pKa = 4.98YY166 pKa = 12.18DD167 pKa = 4.54NDD169 pKa = 3.57YY170 pKa = 11.59DD171 pKa = 6.24DD172 pKa = 5.78YY173 pKa = 11.98DD174 pKa = 6.15DD175 pKa = 5.6YY176 pKa = 12.18DD177 pKa = 6.19DD178 pKa = 5.7YY179 pKa = 12.14DD180 pKa = 5.82DD181 pKa = 5.41DD182 pKa = 4.25

Molecular weight: 20.97 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1G5W4W1|A0A1G5W4W1_9FIRM DNA ligase OS=Allisonella histaminiformans OX=209880 GN=ligA PE=3 SV=1
MM1 pKa = 7.75AKK3 pKa = 10.54GKK5 pKa = 7.67MTYY8 pKa = 9.74QPNNLWRR15 pKa = 11.84KK16 pKa = 6.7RR17 pKa = 11.84THH19 pKa = 6.17GFRR22 pKa = 11.84ARR24 pKa = 11.84MKK26 pKa = 8.64TKK28 pKa = 10.33AGRR31 pKa = 11.84IVLKK35 pKa = 10.36RR36 pKa = 11.84RR37 pKa = 11.84RR38 pKa = 11.84AKK40 pKa = 9.89GRR42 pKa = 11.84KK43 pKa = 8.67VLSAA47 pKa = 4.05

Molecular weight: 5.55 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1536

0

1536

476354

13

1544

310.1

34.57

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.478 ± 0.061

1.235 ± 0.024

5.453 ± 0.047

6.637 ± 0.072

3.989 ± 0.038

7.577 ± 0.063

2.409 ± 0.029

6.9 ± 0.049

6.008 ± 0.05

9.065 ± 0.063

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.282 ± 0.029

3.795 ± 0.041

3.844 ± 0.037

3.259 ± 0.042

5.273 ± 0.052

5.764 ± 0.043

5.29 ± 0.04

7.125 ± 0.051

1.062 ± 0.022

3.555 ± 0.038
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski