Sediminihabitans luteus

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Cellulomonadaceae; Sediminihabitans

Average proteome isoelectric point is 5.9

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2995 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2M9D055|A0A2M9D055_9CELL Uncharacterized protein OS=Sediminihabitans luteus OX=1138585 GN=CLV28_0806 PE=4 SV=1
MM1 pKa = 6.85PTHH4 pKa = 5.73YY5 pKa = 10.14RR6 pKa = 11.84YY7 pKa = 9.96GVSMRR12 pKa = 11.84TSRR15 pKa = 11.84PATVAVVVAALVTALLAGCDD35 pKa = 3.79APGKK39 pKa = 9.33EE40 pKa = 4.34QTPTLDD46 pKa = 3.55PSASSTQGADD56 pKa = 3.53PLAGAPAGYY65 pKa = 9.9EE66 pKa = 3.92SYY68 pKa = 11.01YY69 pKa = 10.88GQTLEE74 pKa = 4.39WEE76 pKa = 4.59SCGGGYY82 pKa = 10.3EE83 pKa = 4.38CTDD86 pKa = 3.41ADD88 pKa = 5.92APISWQDD95 pKa = 3.2PDD97 pKa = 4.26LGSIQLALKK106 pKa = 10.02RR107 pKa = 11.84LPASGDD113 pKa = 3.48RR114 pKa = 11.84QGSLLINPGGPGSSGVEE131 pKa = 4.14FVTSAASIIGDD142 pKa = 3.89RR143 pKa = 11.84VKK145 pKa = 10.79GAYY148 pKa = 9.88DD149 pKa = 3.44LVGFDD154 pKa = 3.75PRR156 pKa = 11.84GVGGSAPVKK165 pKa = 10.7CLDD168 pKa = 5.2DD169 pKa = 4.36ADD171 pKa = 4.6KK172 pKa = 11.17DD173 pKa = 3.88ASLSASYY180 pKa = 9.94PHH182 pKa = 5.69TTEE185 pKa = 5.62GIAAMADD192 pKa = 3.75DD193 pKa = 4.69LEE195 pKa = 5.26AWAQACDD202 pKa = 3.83EE203 pKa = 4.3NTGEE207 pKa = 4.37QLATVDD213 pKa = 3.81TQSAARR219 pKa = 11.84DD220 pKa = 3.49MDD222 pKa = 3.72MLRR225 pKa = 11.84AVLGDD230 pKa = 3.73EE231 pKa = 3.95QLHH234 pKa = 5.52YY235 pKa = 11.17LGFSYY240 pKa = 8.67GTQLGATYY248 pKa = 10.71AGLFPQTVGRR258 pKa = 11.84MVLDD262 pKa = 3.92GAIDD266 pKa = 3.58TTLDD270 pKa = 3.31ADD272 pKa = 4.53EE273 pKa = 5.19ISAEE277 pKa = 3.97QAVGFEE283 pKa = 4.25NALRR287 pKa = 11.84AYY289 pKa = 9.2VTDD292 pKa = 3.9CLGGRR297 pKa = 11.84ACPLSGSVDD306 pKa = 2.83GGMQQIRR313 pKa = 11.84DD314 pKa = 3.76LLDD317 pKa = 3.37RR318 pKa = 11.84TLEE321 pKa = 4.47DD322 pKa = 4.48PLPTDD327 pKa = 3.31SDD329 pKa = 3.86RR330 pKa = 11.84DD331 pKa = 3.7LTQSLTFYY339 pKa = 11.13GIALPLYY346 pKa = 10.64SKK348 pKa = 11.23ANWSLLTNALSDD360 pKa = 3.76ALEE363 pKa = 5.1DD364 pKa = 4.3GDD366 pKa = 5.63GSTLLYY372 pKa = 10.81LADD375 pKa = 5.28FYY377 pKa = 11.77NDD379 pKa = 3.72RR380 pKa = 11.84QPDD383 pKa = 3.58GSFSSNSAEE392 pKa = 3.77AFRR395 pKa = 11.84AINCLDD401 pKa = 3.5DD402 pKa = 5.18RR403 pKa = 11.84GNPDD407 pKa = 3.89PDD409 pKa = 3.9FMAEE413 pKa = 3.72QAEE416 pKa = 4.71EE417 pKa = 4.15IEE419 pKa = 4.39AAAPTMGEE427 pKa = 3.92FFTYY431 pKa = 10.4SGLTCADD438 pKa = 3.23WPVPEE443 pKa = 5.07VEE445 pKa = 4.37QQFDD449 pKa = 3.43LHH451 pKa = 7.65ASGAAPIVVVGTTNDD466 pKa = 3.55PATPYY471 pKa = 10.5VWAQGLAKK479 pKa = 9.67TLDD482 pKa = 3.54SATLVTFEE490 pKa = 4.97GEE492 pKa = 3.74GHH494 pKa = 5.44TAYY497 pKa = 10.31GSSNDD502 pKa = 3.9CVGDD506 pKa = 3.61AVDD509 pKa = 5.52DD510 pKa = 4.03YY511 pKa = 11.55LVDD514 pKa = 3.6GTVPKK519 pKa = 10.82DD520 pKa = 3.3GLTCC524 pKa = 4.55

Molecular weight: 54.98 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2M9CCW4|A0A2M9CCW4_9CELL Uncharacterized protein OS=Sediminihabitans luteus OX=1138585 GN=CLV28_2695 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.0RR4 pKa = 11.84TFQPNNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84AKK15 pKa = 8.7THH17 pKa = 5.15GFRR20 pKa = 11.84LRR22 pKa = 11.84MRR24 pKa = 11.84TRR26 pKa = 11.84AGRR29 pKa = 11.84SILAARR35 pKa = 11.84RR36 pKa = 11.84RR37 pKa = 11.84KK38 pKa = 9.61GRR40 pKa = 11.84AEE42 pKa = 3.84LSAA45 pKa = 4.93

Molecular weight: 5.32 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2995

0

2995

1036919

29

5544

346.2

36.56

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.55 ± 0.061

0.566 ± 0.01

6.909 ± 0.047

5.258 ± 0.042

2.495 ± 0.028

9.467 ± 0.045

2.081 ± 0.027

2.88 ± 0.032

1.519 ± 0.031

9.82 ± 0.054

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.537 ± 0.019

1.487 ± 0.022

5.943 ± 0.047

2.464 ± 0.026

7.493 ± 0.061

5.092 ± 0.037

6.756 ± 0.069

10.388 ± 0.062

1.499 ± 0.019

1.796 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski