Lake Sarah-associated circular molecule 11

Taxonomy: Viruses; unclassified viruses

Average proteome isoelectric point is 7.68

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A126G9B9|A0A126G9B9_9VIRU Putative coat protein OS=Lake Sarah-associated circular molecule 11 OX=1685726 PE=4 SV=1
MM1 pKa = 7.36AVEE4 pKa = 4.13DD5 pKa = 4.15KK6 pKa = 10.65KK7 pKa = 11.21RR8 pKa = 11.84KK9 pKa = 9.62LGVVSTGAVPGGKK22 pKa = 8.04TYY24 pKa = 10.73VPRR27 pKa = 11.84GISNRR32 pKa = 11.84PEE34 pKa = 4.18LKK36 pKa = 10.74HH37 pKa = 6.53FDD39 pKa = 3.61LTVGVAALDD48 pKa = 3.41TWQMVTNTILCSIRR62 pKa = 11.84LGTGPTQRR70 pKa = 11.84IGRR73 pKa = 11.84KK74 pKa = 8.55IRR76 pKa = 11.84VKK78 pKa = 10.22SVVFRR83 pKa = 11.84GRR85 pKa = 11.84MEE87 pKa = 4.71LGVAANNANSAYY99 pKa = 9.43TIDD102 pKa = 5.18FIWDD106 pKa = 3.31KK107 pKa = 9.4QTNGSTPTMGTIYY120 pKa = 9.93TGSTAYY126 pKa = 10.69SLPNPDD132 pKa = 2.91NDD134 pKa = 5.13EE135 pKa = 3.76RR136 pKa = 11.84FEE138 pKa = 4.17WVKK141 pKa = 10.63RR142 pKa = 11.84ISRR145 pKa = 11.84DD146 pKa = 3.46DD147 pKa = 3.61PASNFTLVNTKK158 pKa = 9.57FNCNKK163 pKa = 10.14LISYY167 pKa = 10.47DD168 pKa = 3.56SDD170 pKa = 3.76LGTVSDD176 pKa = 4.17LTQNNLLMTMCSPFDD191 pKa = 3.68ATPTLAGEE199 pKa = 4.0LRR201 pKa = 11.84VYY203 pKa = 10.57FVDD206 pKa = 3.98EE207 pKa = 4.15

Molecular weight: 22.84 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A126G9B9|A0A126G9B9_9VIRU Putative coat protein OS=Lake Sarah-associated circular molecule 11 OX=1685726 PE=4 SV=1
MM1 pKa = 7.36AVEE4 pKa = 4.13DD5 pKa = 4.15KK6 pKa = 10.65KK7 pKa = 11.21RR8 pKa = 11.84KK9 pKa = 9.62LGVVSTGAVPGGKK22 pKa = 8.04TYY24 pKa = 10.73VPRR27 pKa = 11.84GISNRR32 pKa = 11.84PEE34 pKa = 4.18LKK36 pKa = 10.74HH37 pKa = 6.53FDD39 pKa = 3.61LTVGVAALDD48 pKa = 3.41TWQMVTNTILCSIRR62 pKa = 11.84LGTGPTQRR70 pKa = 11.84IGRR73 pKa = 11.84KK74 pKa = 8.55IRR76 pKa = 11.84VKK78 pKa = 10.22SVVFRR83 pKa = 11.84GRR85 pKa = 11.84MEE87 pKa = 4.71LGVAANNANSAYY99 pKa = 9.43TIDD102 pKa = 5.18FIWDD106 pKa = 3.31KK107 pKa = 9.4QTNGSTPTMGTIYY120 pKa = 9.93TGSTAYY126 pKa = 10.69SLPNPDD132 pKa = 2.91NDD134 pKa = 5.13EE135 pKa = 3.76RR136 pKa = 11.84FEE138 pKa = 4.17WVKK141 pKa = 10.63RR142 pKa = 11.84ISRR145 pKa = 11.84DD146 pKa = 3.46DD147 pKa = 3.61PASNFTLVNTKK158 pKa = 9.57FNCNKK163 pKa = 10.14LISYY167 pKa = 10.47DD168 pKa = 3.56SDD170 pKa = 3.76LGTVSDD176 pKa = 4.17LTQNNLLMTMCSPFDD191 pKa = 3.68ATPTLAGEE199 pKa = 4.0LRR201 pKa = 11.84VYY203 pKa = 10.57FVDD206 pKa = 3.98EE207 pKa = 4.15

Molecular weight: 22.84 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1

0

1

207

207

207

207.0

22.84

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.797 ± 0.0

1.449 ± 0.0

6.763 ± 0.0

3.382 ± 0.0

3.865 ± 0.0

7.729 ± 0.0

0.483 ± 0.0

4.831 ± 0.0

5.314 ± 0.0

7.729 ± 0.0

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.899 ± 0.0

6.763 ± 0.0

4.831 ± 0.0

1.932 ± 0.0

6.28 ± 0.0

6.763 ± 0.0

10.628 ± 0.0

8.213 ± 0.0

1.449 ± 0.0

2.899 ± 0.0
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski