Bombyx mandarina nucleopolyhedrovirus

Taxonomy: Viruses; Naldaviricetes; Lefavirales; Baculoviridae; Alphabaculovirus; Bombyx mori nucleopolyhedrovirus

Average proteome isoelectric point is 6.9

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 141 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|C3VNV1|C3VNV1_NPVBM VP1054 OS=Bombyx mandarina nucleopolyhedrovirus OX=640862 PE=4 SV=1
MM1 pKa = 7.0TNVWSAADD9 pKa = 3.56VNLINCVLKK18 pKa = 11.16DD19 pKa = 3.72NLFLINNNYY28 pKa = 9.84IILNVFDD35 pKa = 4.36QEE37 pKa = 4.17TDD39 pKa = 3.26QVRR42 pKa = 11.84PLCLGEE48 pKa = 4.21INAFQTDD55 pKa = 3.22AAAQADD61 pKa = 3.89AMLDD65 pKa = 3.42TSSTSEE71 pKa = 4.07LQSNASTT78 pKa = 3.69

Molecular weight: 8.54 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|C3VNU2|C3VNU2_NPVBM Ac44-like protein OS=Bombyx mandarina nucleopolyhedrovirus OX=640862 PE=4 SV=1
MM1 pKa = 6.3NTRR4 pKa = 11.84YY5 pKa = 7.93ATCYY9 pKa = 9.91VCDD12 pKa = 3.58EE13 pKa = 4.24LVYY16 pKa = 10.75LFKK19 pKa = 10.53KK20 pKa = 8.59TFSNMSPSAAAFYY33 pKa = 7.6QQRR36 pKa = 11.84MAIVKK41 pKa = 10.1NGIVLCVRR49 pKa = 11.84CSSKK53 pKa = 11.02LKK55 pKa = 9.96IGNGISIPIYY65 pKa = 8.82PNRR68 pKa = 11.84RR69 pKa = 11.84AQQHH73 pKa = 4.95ARR75 pKa = 11.84RR76 pKa = 11.84SRR78 pKa = 3.12

Molecular weight: 8.94 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

141

0

141

38425

53

1222

272.5

31.46

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.195 ± 0.187

2.392 ± 0.146

6.072 ± 0.149

5.327 ± 0.158

4.937 ± 0.125

3.323 ± 0.194

2.209 ± 0.1

6.576 ± 0.105

7.196 ± 0.239

9.286 ± 0.149

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.774 ± 0.087

8.234 ± 0.179

3.844 ± 0.197

3.724 ± 0.173

4.721 ± 0.18

6.23 ± 0.16

5.819 ± 0.15

6.605 ± 0.13

0.747 ± 0.067

4.789 ± 0.106
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski