Herminiimonas arsenicoxydans

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herminiimonas

Average proteome isoelectric point is 6.78

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3272 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    

Protein with the lowest isoelectric point:
>tr|A4G6F1|A4G6F1_HERAR Putative general secretion pathway protein putative MSHA biogenesis protein OS=Herminiimonas arsenicoxydans OX=204773 GN=HEAR1938 PE=4 SV=2
MM1 pKa = 7.0ATAPVSKK8 pKa = 9.15TANNQPAADD17 pKa = 4.06KK18 pKa = 10.44NGAPIRR24 pKa = 11.84VVTPDD29 pKa = 3.15QQGNFQLKK37 pKa = 9.49IGKK40 pKa = 9.77GDD42 pKa = 3.22IAKK45 pKa = 9.79VHH47 pKa = 5.99IVDD50 pKa = 3.44VDD52 pKa = 3.59MVLYY56 pKa = 11.06LNDD59 pKa = 3.5GTKK62 pKa = 10.6LVLAGGAIGAMDD74 pKa = 4.95DD75 pKa = 3.45SVMVDD80 pKa = 3.94FSNGRR85 pKa = 11.84DD86 pKa = 3.63SAAHH90 pKa = 6.1MMDD93 pKa = 2.94QVGIIPLQKK102 pKa = 9.99LDD104 pKa = 3.59QPRR107 pKa = 11.84VLSTEE112 pKa = 3.88PQGGDD117 pKa = 2.87GRR119 pKa = 11.84GNMQEE124 pKa = 4.0EE125 pKa = 3.77ASYY128 pKa = 10.7RR129 pKa = 11.84QTEE132 pKa = 4.35GAQDD136 pKa = 4.1LAAQAQAANAAISALSKK153 pKa = 11.35AMVQLANVVQTNAQPVNNFKK173 pKa = 11.13SNYY176 pKa = 8.48EE177 pKa = 4.11GQASQQQPLIKK188 pKa = 9.83PVPQVLPEE196 pKa = 4.18RR197 pKa = 11.84PGVTPQEE204 pKa = 4.23FVIGPNAPALSVHH217 pKa = 6.44LVNTVGTTQDD227 pKa = 3.07GTVLKK232 pKa = 10.81GSGGSSAFQSDD243 pKa = 4.18TNTSNIAQIAPQIINAGNDD262 pKa = 2.74VDD264 pKa = 4.91TIWANGQAPIGNTPDD279 pKa = 3.3GTFSKK284 pKa = 10.24ILNVQITGDD293 pKa = 3.81GKK295 pKa = 10.5VQSLTITAVLPAGITIVGATSLGNNVYY322 pKa = 10.04QIPVSPDD329 pKa = 2.83TKK331 pKa = 10.54DD332 pKa = 3.19YY333 pKa = 10.8RR334 pKa = 11.84IEE336 pKa = 3.87LRR338 pKa = 11.84YY339 pKa = 9.24DD340 pKa = 3.34TVDD343 pKa = 3.72PKK345 pKa = 11.41ASAPIHH351 pKa = 6.97ADD353 pKa = 3.28FKK355 pKa = 11.55LNFEE359 pKa = 4.45LTVITTEE366 pKa = 5.13GIQVLNSVRR375 pKa = 11.84QVVLKK380 pKa = 10.81DD381 pKa = 3.09ATTADD386 pKa = 3.97DD387 pKa = 4.92LNYY390 pKa = 10.64ANPITGEE397 pKa = 4.09SALVLPAQGISHH409 pKa = 7.0IVHH412 pKa = 6.83AGDD415 pKa = 3.42NAGTTIYY422 pKa = 10.65GSNANDD428 pKa = 3.49FLYY431 pKa = 10.83GGTGDD436 pKa = 3.56DD437 pKa = 3.41TLYY440 pKa = 10.92GGKK443 pKa = 10.51GNTYY447 pKa = 8.65FQSGAGDD454 pKa = 3.64DD455 pKa = 4.28TIVGGGNIGGTNINTVGYY473 pKa = 8.07TNSTSGVLVDD483 pKa = 5.41LNTGNALDD491 pKa = 4.19GFGGRR496 pKa = 11.84DD497 pKa = 3.2TLQNIQKK504 pKa = 10.33GIGGAHH510 pKa = 7.79DD511 pKa = 3.58DD512 pKa = 3.9TFIVGVNTKK521 pKa = 10.36GVDD524 pKa = 3.3GGSAGSDD531 pKa = 3.21TIDD534 pKa = 4.14FSASNAAVTVNLATGTGTGGYY555 pKa = 9.39AGNVTFTNIEE565 pKa = 4.13NVVGSSFSDD574 pKa = 3.16TFIASNAVNKK584 pKa = 10.11FDD586 pKa = 4.82GGASGSNTVSYY597 pKa = 11.17ANSPSSSTSGVTVDD611 pKa = 4.38LLNGVGSGNDD621 pKa = 3.37AAGDD625 pKa = 3.52QYY627 pKa = 12.17VNIQNVIGSAYY638 pKa = 10.7NDD640 pKa = 3.49TFVANLDD647 pKa = 3.73VNHH650 pKa = 6.87FDD652 pKa = 4.45GMGGVNTVSYY662 pKa = 9.96AGSAAGVDD670 pKa = 3.04VDD672 pKa = 4.46FYY674 pKa = 11.16KK675 pKa = 11.23GQGAGGNAAGDD686 pKa = 3.86TYY688 pKa = 11.81KK689 pKa = 10.95NIQNVIGSSFDD700 pKa = 3.7DD701 pKa = 4.18KK702 pKa = 11.22FVADD706 pKa = 3.85TDD708 pKa = 4.05SLNFNGGAGGIDD720 pKa = 3.19TVSYY724 pKa = 10.41EE725 pKa = 4.18RR726 pKa = 11.84YY727 pKa = 9.48LSGVVVDD734 pKa = 4.58ASRR737 pKa = 11.84NVGGIEE743 pKa = 3.82LTPAVGGTPATYY755 pKa = 10.6SNSYY759 pKa = 9.28TNIDD763 pKa = 3.79KK764 pKa = 10.88FVGTAYY770 pKa = 10.57ADD772 pKa = 3.38TFIASNHH779 pKa = 6.11ADD781 pKa = 3.56NFDD784 pKa = 4.01GLDD787 pKa = 3.62GMDD790 pKa = 3.63TVSYY794 pKa = 10.57AADD797 pKa = 3.45TAGVIVNLRR806 pKa = 11.84TGLGSGAGSLADD818 pKa = 4.55GDD820 pKa = 3.92TLANIEE826 pKa = 4.16NVIGGSGNDD835 pKa = 2.69RR836 pKa = 11.84FVANDD841 pKa = 3.4SANVFDD847 pKa = 5.68GGGGSNTVDD856 pKa = 3.33YY857 pKa = 11.44SEE859 pKa = 4.44STTGAVTVDD868 pKa = 3.81LVHH871 pKa = 6.82ANGMGTSGGFAQGDD885 pKa = 3.88KK886 pKa = 10.77YY887 pKa = 11.5INIQNVTGSVFNDD900 pKa = 3.32TFIASAAEE908 pKa = 3.89NTFDD912 pKa = 5.38GGGGDD917 pKa = 3.97HH918 pKa = 6.75NRR920 pKa = 11.84VSYY923 pKa = 11.54ANDD926 pKa = 3.54TVGVTINLVSGQGSGAGSLAEE947 pKa = 4.13GDD949 pKa = 3.9TYY951 pKa = 11.54FNIQDD956 pKa = 3.54ATGGSGDD963 pKa = 3.81DD964 pKa = 3.42TFIASDD970 pKa = 3.57VANAFSGGLGSNTVSYY986 pKa = 9.86EE987 pKa = 3.76LSNAGVTVDD996 pKa = 5.07LVAGTANGGYY1006 pKa = 8.55ATGDD1010 pKa = 3.38SFINIQNVKK1019 pKa = 9.96GSTSADD1025 pKa = 2.64IFIANNIANSFIGNGGVDD1043 pKa = 3.34TVSYY1047 pKa = 11.25AKK1049 pKa = 9.83ATDD1052 pKa = 3.92GSGVTVDD1059 pKa = 4.25LNAGEE1064 pKa = 4.39GSGGYY1069 pKa = 9.69AQGDD1073 pKa = 3.81RR1074 pKa = 11.84YY1075 pKa = 11.14DD1076 pKa = 4.42GIRR1079 pKa = 11.84NAIGTSYY1086 pKa = 11.56DD1087 pKa = 3.49DD1088 pKa = 3.66TFVASNLANNFDD1100 pKa = 4.27GGLGSNTVSYY1110 pKa = 10.42AASDD1114 pKa = 3.53LGVTVNLLNGTGTGGYY1130 pKa = 10.04ADD1132 pKa = 3.88NDD1134 pKa = 4.49SYY1136 pKa = 11.96TSIQNVIGSAADD1148 pKa = 3.61DD1149 pKa = 3.94LFIANGAVNRR1159 pKa = 11.84FDD1161 pKa = 4.83GGVSTAISHH1170 pKa = 6.07NRR1172 pKa = 11.84VSYY1175 pKa = 9.14ATDD1178 pKa = 3.41TADD1181 pKa = 4.53LTIDD1185 pKa = 3.98LLNVGVVGIGGNAAGDD1201 pKa = 3.92TYY1203 pKa = 11.92VNIQDD1208 pKa = 3.67VTGGSGDD1215 pKa = 3.62DD1216 pKa = 3.46TFIASSAANKK1226 pKa = 10.29FEE1228 pKa = 4.76GGLGSNTVSYY1238 pKa = 11.16AGTAGNNTIDD1248 pKa = 4.54LATANAAATGTGFASGDD1265 pKa = 3.64TFSNIQNLIGGSGTDD1280 pKa = 2.87IFYY1283 pKa = 11.11ASAAANNLNGDD1294 pKa = 3.88GGVNTVDD1301 pKa = 3.57YY1302 pKa = 10.92SKK1304 pKa = 10.08STDD1307 pKa = 3.22SFGVIVDD1314 pKa = 3.83LVANKK1319 pKa = 10.6GYY1321 pKa = 11.29GNGAGNAALGFAAGDD1336 pKa = 3.74VYY1338 pKa = 11.31TNIQNAVGTSKK1349 pKa = 11.33DD1350 pKa = 3.39DD1351 pKa = 3.87LFIISAGAVANTIDD1365 pKa = 4.53GGTGNNTVSYY1375 pKa = 10.51LNEE1378 pKa = 3.93TSAVTVDD1385 pKa = 3.81LANGRR1390 pKa = 11.84GYY1392 pKa = 8.42YY1393 pKa = 9.8TSGAGVQDD1401 pKa = 3.83TLTNIQNATGGSGDD1415 pKa = 3.68DD1416 pKa = 3.47TFIASSAANKK1426 pKa = 10.34FEE1428 pKa = 4.69GGLGNNTVSYY1438 pKa = 11.07AGTAGNNTIDD1448 pKa = 4.54LATANAAATGTGFASGDD1465 pKa = 3.64TFSNIQNLIGGSGTDD1480 pKa = 2.87IFYY1483 pKa = 11.11ASAAANNLNGDD1494 pKa = 3.88GGVNTVDD1501 pKa = 3.57YY1502 pKa = 10.92SKK1504 pKa = 10.08STDD1507 pKa = 3.22SFGVIVDD1514 pKa = 3.83LVANKK1519 pKa = 10.6GYY1521 pKa = 11.29GNGAGNAALGFAAGDD1536 pKa = 3.74VYY1538 pKa = 11.31TNIQNAVGTSKK1549 pKa = 11.33DD1550 pKa = 3.39DD1551 pKa = 3.87LFIISAGAVANTVDD1565 pKa = 4.5GGTGNNTVSYY1575 pKa = 10.51LNEE1578 pKa = 3.93TSAVTVDD1585 pKa = 3.81LANGRR1590 pKa = 11.84GYY1592 pKa = 8.42YY1593 pKa = 9.8TSGAGVQDD1601 pKa = 3.83TLTNIQNATGGSGDD1615 pKa = 3.68DD1616 pKa = 3.47TFIASSAANKK1626 pKa = 10.34FEE1628 pKa = 4.69GGLGNNTVSYY1638 pKa = 11.07AGTAGNNTIDD1648 pKa = 4.54LATANAAATGTGFASGDD1665 pKa = 3.64TFSNIQNLIGGSGTDD1680 pKa = 2.87IFYY1683 pKa = 11.11ASAAANNLNGDD1694 pKa = 3.88GGVNTVDD1701 pKa = 3.57YY1702 pKa = 10.92SKK1704 pKa = 10.08STDD1707 pKa = 3.22SFGVIVDD1714 pKa = 3.83LVANKK1719 pKa = 10.6GYY1721 pKa = 11.29GNGAGNAALGFAAGDD1736 pKa = 3.74VYY1738 pKa = 11.31TNIQNAVGTSKK1749 pKa = 11.33DD1750 pKa = 3.39DD1751 pKa = 3.87LFIISAGAVANTIDD1765 pKa = 4.53GGTGNNTVSYY1775 pKa = 10.51LNEE1778 pKa = 3.93TSAVTVDD1785 pKa = 3.81LANGRR1790 pKa = 11.84GYY1792 pKa = 8.42YY1793 pKa = 9.8TSGAGVQDD1801 pKa = 3.83TLTNIQNATGGSGDD1815 pKa = 3.68DD1816 pKa = 3.47TFIASSAANKK1826 pKa = 10.34FEE1828 pKa = 4.69GGLGNNTVSYY1838 pKa = 11.07AGTAGNNTIDD1848 pKa = 4.54LATANAAATGTGFALGDD1865 pKa = 3.71TFSNIQNLIGGSGTDD1880 pKa = 2.87IFYY1883 pKa = 11.11ASAAANNLNGDD1894 pKa = 3.88GGVNTVDD1901 pKa = 3.57YY1902 pKa = 10.92SKK1904 pKa = 10.08STDD1907 pKa = 3.22SFGVIVDD1914 pKa = 3.83LVANKK1919 pKa = 10.6GYY1921 pKa = 11.29GNGAGNAALGFAAGDD1936 pKa = 3.66VYY1938 pKa = 11.73ANIQNAVGTSKK1949 pKa = 11.33DD1950 pKa = 3.39DD1951 pKa = 3.87LFIISAGAVANTVDD1965 pKa = 4.5GGTGNNTVSYY1975 pKa = 10.51LNEE1978 pKa = 3.93TSAVTVDD1985 pKa = 3.81LANGRR1990 pKa = 11.84GYY1992 pKa = 8.42YY1993 pKa = 9.8TSGAGVQDD2001 pKa = 3.83TLTNIQNATGGSGDD2015 pKa = 3.74DD2016 pKa = 3.42TFIASDD2022 pKa = 3.6VANKK2026 pKa = 10.41FEE2028 pKa = 4.72GNAGADD2034 pKa = 3.21TVTYY2038 pKa = 10.58SDD2040 pKa = 4.1ANASVTVNLSTNSGSAGWATGDD2062 pKa = 3.32TYY2064 pKa = 11.91SNIEE2068 pKa = 3.89NVIGSKK2074 pKa = 10.46FADD2077 pKa = 3.71TLIAAATGKK2086 pKa = 8.21TVLTGLGGADD2096 pKa = 3.32SLTGVSSNSMNTYY2109 pKa = 10.69ASYY2112 pKa = 10.84AGSAAGVIVNLEE2124 pKa = 4.02TGFGSGAGSDD2134 pKa = 3.44AVGDD2138 pKa = 3.82HH2139 pKa = 6.2LTYY2142 pKa = 10.12IDD2144 pKa = 4.18NLIGSSFDD2152 pKa = 4.33DD2153 pKa = 2.9IFYY2156 pKa = 11.03ANTNANIFDD2165 pKa = 4.26GGAGGIDD2172 pKa = 3.32TVDD2175 pKa = 3.49YY2176 pKa = 10.56SASTGIVHH2184 pKa = 6.79VDD2186 pKa = 3.52LSNTTGTSGFYY2197 pKa = 11.02ANGDD2201 pKa = 3.39KK2202 pKa = 10.64FINIQNVTGSGYY2214 pKa = 11.01DD2215 pKa = 3.55DD2216 pKa = 3.81VLKK2219 pKa = 10.88GAAGGNSIIRR2229 pKa = 11.84GGAGADD2235 pKa = 3.05AMTGVGTGNYY2245 pKa = 9.3ASYY2248 pKa = 10.29VGSSGAVTIDD2258 pKa = 3.41LTNGSGSGADD2268 pKa = 3.49AQGDD2272 pKa = 4.04TLVNIYY2278 pKa = 10.66NVIGSDD2284 pKa = 3.39HH2285 pKa = 6.98NDD2287 pKa = 2.54IFIAGTQANIFKK2299 pKa = 10.49GGAGSDD2305 pKa = 3.41TVSYY2309 pKa = 9.99MNSNLAVTVDD2319 pKa = 3.72LTAGLLAAGSTAGGYY2334 pKa = 10.16ALNDD2338 pKa = 3.28RR2339 pKa = 11.84YY2340 pKa = 10.77EE2341 pKa = 4.52SIEE2344 pKa = 3.91NVIGSSFGDD2353 pKa = 3.15TFFANNVANVFNGGTGEE2370 pKa = 4.67AIGIHH2375 pKa = 5.46NVVSYY2380 pKa = 11.31AKK2382 pKa = 9.36DD2383 pKa = 3.08TATTGVGVTVDD2394 pKa = 3.62LTNTTGAGTSGGFAAGDD2411 pKa = 3.3IFINIQDD2418 pKa = 3.8VIGTGRR2424 pKa = 11.84NDD2426 pKa = 3.16TFIANDD2432 pKa = 3.44AANAFTGGGNTTVGASTNVLLNWTGGDD2459 pKa = 3.31TVSYY2463 pKa = 10.33KK2464 pKa = 10.77SSTTDD2469 pKa = 3.03VVASLLSGVGGTGGYY2484 pKa = 11.23ANGDD2488 pKa = 3.71TYY2490 pKa = 11.74NGIEE2494 pKa = 4.4NLTGSAIGGVKK2505 pKa = 8.88STLTGDD2511 pKa = 3.48GNANILTALGSGTTNVLNGGGGADD2535 pKa = 3.73LLDD2538 pKa = 4.02GRR2540 pKa = 11.84EE2541 pKa = 4.35GGHH2544 pKa = 5.48NTLTGGAGNDD2554 pKa = 3.84TYY2556 pKa = 9.45WAKK2559 pKa = 8.44MTGSTIANIDD2569 pKa = 4.02HH2570 pKa = 6.76IVGGDD2575 pKa = 3.46GSDD2578 pKa = 3.3TLKK2581 pKa = 11.17LFDD2584 pKa = 3.64ITTNSTINMTSFLTGTGPGDD2604 pKa = 3.56YY2605 pKa = 9.66KK2606 pKa = 10.13VTGMTTLDD2614 pKa = 3.25IRR2616 pKa = 11.84DD2617 pKa = 3.94GVASTLQFTAQDD2629 pKa = 4.18VINMGMSNGTYY2640 pKa = 9.85SVLTVRR2646 pKa = 11.84MDD2648 pKa = 3.18ATGDD2652 pKa = 3.81LLSFSGDD2659 pKa = 3.01FRR2661 pKa = 11.84AGNGYY2666 pKa = 10.3VSFYY2670 pKa = 11.03ADD2672 pKa = 3.17PSSNVEE2678 pKa = 3.7LARR2681 pKa = 11.84INTQYY2686 pKa = 10.44TT2687 pKa = 3.39

Molecular weight:
268.44 kDa
Isoelectric point according different methods:






Protein with the highest isoelectric point:
>sp|A4G1G4|SMG_HERAR Protein Smg homolog OS=Herminiimonas arsenicoxydans OX=204773 GN=smg PE=3 SV=2
MM1 pKa = 7.35KK2 pKa = 9.36RR3 pKa = 11.84TYY5 pKa = 9.97QPSVVRR11 pKa = 11.84RR12 pKa = 11.84KK13 pKa = 8.19RR14 pKa = 11.84THH16 pKa = 5.61GFRR19 pKa = 11.84VRR21 pKa = 11.84MATRR25 pKa = 11.84GGRR28 pKa = 11.84AVLNARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.77GRR39 pKa = 11.84KK40 pKa = 8.8RR41 pKa = 11.84LAAA44 pKa = 4.42

Molecular weight:
5.12 kDa
Isoelectric point according different methods:






Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3272

0

3272

1004082

20

2925

306.9

33.65

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.204 ± 0.058

0.933 ± 0.014

5.263 ± 0.029

5.528 ± 0.042

3.824 ± 0.029

7.451 ± 0.053

2.262 ± 0.021

5.893 ± 0.029

4.493 ± 0.036

10.392 ± 0.057

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.752 ± 0.019

3.416 ± 0.034

4.524 ± 0.028

4.043 ± 0.032

5.817 ± 0.041

5.883 ± 0.03

5.413 ± 0.029

7.111 ± 0.031

1.276 ± 0.019

2.52 ± 0.019

Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski