Neodiprion sertifer nucleopolyhedrovirus

Taxonomy: Viruses; Naldaviricetes; Lefavirales; Baculoviridae; Gammabaculovirus

Average proteome isoelectric point is 6.5

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 90 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q6JKC3|Q6JKC3_9CBAC Uncharacterized protein OS=Neodiprion sertifer nucleopolyhedrovirus OX=111874 PE=4 SV=1
MM1 pKa = 7.65FSGLRR6 pKa = 11.84KK7 pKa = 7.27TAKK10 pKa = 10.12IYY12 pKa = 11.14DD13 pKa = 3.77NTADD17 pKa = 4.31LLVDD21 pKa = 3.47NTSLVVGKK29 pKa = 9.29FSNFDD34 pKa = 3.44AVFSLPSAKK43 pKa = 10.1SISKK47 pKa = 10.54GYY49 pKa = 10.02VIDD52 pKa = 3.65YY53 pKa = 7.98ATFIGNVDD61 pKa = 3.39TFSINKK67 pKa = 9.21ILRR70 pKa = 11.84QADD73 pKa = 3.63DD74 pKa = 3.79VNIEE78 pKa = 4.23TLFNATDD85 pKa = 3.46TDD87 pKa = 3.77IAGLNVLRR95 pKa = 11.84KK96 pKa = 9.31AANVPDD102 pKa = 3.46NTIYY106 pKa = 10.07VAEE109 pKa = 4.45VKK111 pKa = 10.4RR112 pKa = 11.84INLKK116 pKa = 10.27SLYY119 pKa = 9.63PSLDD123 pKa = 2.98VKK125 pKa = 10.37TYY127 pKa = 11.08DD128 pKa = 4.96GIASGLNNNPKK139 pKa = 10.2LYY141 pKa = 10.57SYY143 pKa = 11.42LKK145 pKa = 9.53GLGVATLAGGAVVLVLLGIDD165 pKa = 4.28LVQDD169 pKa = 4.39IIDD172 pKa = 3.82ALNRR176 pKa = 11.84TGGSYY181 pKa = 8.39FTYY184 pKa = 10.97GEE186 pKa = 4.05ADD188 pKa = 3.48NVEE191 pKa = 4.32SCYY194 pKa = 10.78LRR196 pKa = 11.84YY197 pKa = 9.74RR198 pKa = 11.84SCGVDD203 pKa = 3.2QSSVDD208 pKa = 3.39TTTYY212 pKa = 10.02CQNFLDD218 pKa = 5.83PILEE222 pKa = 4.61DD223 pKa = 4.57DD224 pKa = 4.1VTALTAICDD233 pKa = 4.07GYY235 pKa = 11.29DD236 pKa = 3.09IDD238 pKa = 5.06TEE240 pKa = 4.17ISVCRR245 pKa = 11.84QSDD248 pKa = 4.33PYY250 pKa = 11.27ADD252 pKa = 4.48PDD254 pKa = 3.74SEE256 pKa = 4.18QWVDD260 pKa = 3.5VSEE263 pKa = 4.18LAEE266 pKa = 4.21NQTLSCVEE274 pKa = 4.62PYY276 pKa = 10.0TFSDD280 pKa = 4.78LISDD284 pKa = 5.54LGLDD288 pKa = 3.51WLLGDD293 pKa = 5.76DD294 pKa = 4.91SILGNSFTSGSDD306 pKa = 3.6SISSLSSYY314 pKa = 9.83IGYY317 pKa = 9.39IAIFAIIIIVGIVFIKK333 pKa = 10.6LSKK336 pKa = 10.51AVSS339 pKa = 3.24

Molecular weight: 36.73 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q6JKE7|Q6JKE7_9CBAC Uncharacterized protein OS=Neodiprion sertifer nucleopolyhedrovirus OX=111874 PE=4 SV=1
MM1 pKa = 7.62SDD3 pKa = 3.25SPVFNRR9 pKa = 11.84SSSRR13 pKa = 11.84NRR15 pKa = 11.84RR16 pKa = 11.84RR17 pKa = 11.84FNLSLPRR24 pKa = 11.84AQVVLQRR31 pKa = 11.84IDD33 pKa = 3.82DD34 pKa = 4.1MPDD37 pKa = 2.58IMALDD42 pKa = 3.85HH43 pKa = 7.33QEE45 pKa = 3.84LNQRR49 pKa = 11.84KK50 pKa = 8.96SLIFYY55 pKa = 9.1LFKK58 pKa = 11.08

Molecular weight: 6.95 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

90

0

90

24263

54

1143

269.6

31.27

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.446 ± 0.196

2.774 ± 0.182

6.669 ± 0.245

5.185 ± 0.189

4.958 ± 0.193

2.864 ± 0.193

2.506 ± 0.173

9.245 ± 0.244

7.237 ± 0.326

8.68 ± 0.226

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.555 ± 0.135

8.305 ± 0.209

2.745 ± 0.135

3.681 ± 0.138

3.821 ± 0.196

7.089 ± 0.27

6.545 ± 0.28

6.075 ± 0.2

0.717 ± 0.06

4.905 ± 0.154
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski