Caulifigura coniformis

Taxonomy: cellular organisms; Bacteria; PVC group; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Caulifigura

Average proteome isoelectric point is 6.59

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5497 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A517SIB0|A0A517SIB0_9PLAN N-acetylglucosamine-6-phosphate deacetylase OS=Caulifigura coniformis OX=2527983 GN=nagA_6 PE=3 SV=1
MM1 pKa = 7.47LFSRR5 pKa = 11.84YY6 pKa = 7.52ATCIRR11 pKa = 11.84CCALLIITAVGLPARR26 pKa = 11.84AEE28 pKa = 4.14IITFDD33 pKa = 4.76DD34 pKa = 4.42LPPGQGTQYY43 pKa = 10.95SGADD47 pKa = 3.43VVGSYY52 pKa = 11.17YY53 pKa = 11.06YY54 pKa = 10.97GDD56 pKa = 3.99SPDD59 pKa = 3.53GVIVEE64 pKa = 4.46GTYY67 pKa = 10.85GPVYY71 pKa = 10.4EE72 pKa = 4.61STFTSGGAGFINRR85 pKa = 11.84VDD87 pKa = 3.37QTYY90 pKa = 10.65GSWSGFSYY98 pKa = 11.33SNVSDD103 pKa = 2.97IVTPGFEE110 pKa = 4.19NQYY113 pKa = 11.16AAYY116 pKa = 8.24TLSDD120 pKa = 4.27PGSGMGPGVDD130 pKa = 3.15NYY132 pKa = 11.17GIAFGYY138 pKa = 10.84DD139 pKa = 3.44DD140 pKa = 4.35IVPNLFDD147 pKa = 5.69PDD149 pKa = 4.23AFDD152 pKa = 3.96PTDD155 pKa = 3.37IADD158 pKa = 4.67LFRR161 pKa = 11.84LPTLSLPTGMAAVGMYY177 pKa = 7.67VTNTTYY183 pKa = 11.24AALSMLGGDD192 pKa = 3.83SFGKK196 pKa = 8.79TFGGASGDD204 pKa = 3.69DD205 pKa = 3.69PDD207 pKa = 4.03WFKK210 pKa = 10.91LTAYY214 pKa = 10.45GIGADD219 pKa = 3.85GLAMAEE225 pKa = 4.1SVEE228 pKa = 5.11FYY230 pKa = 10.76LADD233 pKa = 3.54YY234 pKa = 10.96RR235 pKa = 11.84FDD237 pKa = 5.56DD238 pKa = 3.72NSLDD242 pKa = 4.03YY243 pKa = 10.92IVDD246 pKa = 3.2DD247 pKa = 4.17WTWMDD252 pKa = 4.46LSALADD258 pKa = 3.62AKK260 pKa = 10.93SLHH263 pKa = 6.43FNLASSDD270 pKa = 3.55AGDD273 pKa = 3.62FGMNTPAYY281 pKa = 10.0FAMDD285 pKa = 4.45DD286 pKa = 3.97LQLEE290 pKa = 4.54AVPEE294 pKa = 4.16PTSLMFAAVTGLGVVLRR311 pKa = 11.84RR312 pKa = 11.84RR313 pKa = 11.84GLRR316 pKa = 11.84KK317 pKa = 9.73KK318 pKa = 10.51SAA320 pKa = 3.26

Molecular weight: 34.2 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A517SGF1|A0A517SGF1_9PLAN Uncharacterized protein OS=Caulifigura coniformis OX=2527983 GN=Pan44_32440 PE=4 SV=1
MM1 pKa = 7.64AKK3 pKa = 9.89NAKK6 pKa = 8.9KK7 pKa = 10.38LKK9 pKa = 9.73RR10 pKa = 11.84ANHH13 pKa = 5.73GKK15 pKa = 10.04RR16 pKa = 11.84PASHH20 pKa = 7.08KK21 pKa = 10.44ARR23 pKa = 11.84RR24 pKa = 11.84AKK26 pKa = 10.3RR27 pKa = 11.84AMIKK31 pKa = 8.79TT32 pKa = 3.78

Molecular weight: 3.66 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5497

0

5497

1946564

29

3238

354.1

38.78

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.725 ± 0.039

1.106 ± 0.013

5.679 ± 0.026

6.015 ± 0.028

3.703 ± 0.02

8.087 ± 0.03

2.097 ± 0.015

4.593 ± 0.023

3.683 ± 0.029

9.876 ± 0.039

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.124 ± 0.014

2.851 ± 0.027

5.733 ± 0.03

3.615 ± 0.024

7.267 ± 0.033

6.147 ± 0.022

5.559 ± 0.031

7.41 ± 0.028

1.564 ± 0.015

2.168 ± 0.017
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski